Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach6g01240 CGCCTCTGCAAGGTTCACAAGCAAACCCTAGCGAAGATAGAGGTGAGAGGAAATCGCTCCGGAACGCACACAAACTCCTTCTCTCACCTCGCTTCTTCCGATCCATTTTCTGCGTATCGGTGATCATCAGTGATGGCTTCTTCTGAGCAGCAAGCCCAAGCCAGAACCACTCCTGCAGCTATTGTTGTTGGTAATGCCTTTGTTGATCAGTACTACCATATGTTGCATGAAAGCCCTGAGCACGTGCATCGGTTTTACCATGAGGATAGCAAGCTAGGTCGTGTTGAAAAAGATGGTTTCATGGGTATCGCTACAACATTGCCAGGAATTAATGAGAAGATACTATCACTGGGTTATTCTGAATTTGATTCAGAGATCATATCTGTGGATGCGCAAGAATCTTATGGTGGGGGAGTCCTTGTCTTGGTCACTGGTTTTATGACCAGAAAGGACAATGTGAGGCAGAAATTTACACAATCTTTCTTTCTTGCGCCTCAGGACAAGGGGTACTTTGTCTTGAATGATGTTTTTAGATATGTAGATGAAAATGAAATCCAAGGTTCTGCTGCGGATGTTGAATCTCCTGTAACTCCTGACCAGGATCCTTCTGTCCATGTTCCTGAGGTCGAGGACAAGAAAGCTGAGGATGTTGATGGGGAGGAAGTATACAATGCTGAGAATGGGCATGCTTCATTTGGAGAAGAGGAACCACCTGTACCTGAGGTTGTTGATGAAATTCCTGATGATTCACAGATGGTGATTGGGTGTACCTCTAAAATTGAAGAAGTTCCAAAGAAGTCATATGCCTCTATTGTTAAATTCATGAAGGAGGGTATTGCACCATCGTCCACACTGACTACTGCCCTGGTGAGATCTGCCCCAAAGAGCCAAGAGCAACAGGTGACTGCTGCACTTTCTCCACCTAGCGTGACTGAAGCCACTGGTTCTACTGCAAATTCTAATGGAAGTGGAAACAACCAAGAATCTGAAGCTGAAGGTTATTCTATTTACATGAAAGGTCTGCCATCAAATGCGACAACACTCCTACTAGAGAATGAGTTCAAGAAGTTTGGAACTATTAAGAGTGGTGGTATCCAAGTCAGGACCCAAAAGGGATTTTGCTTTGGCTTTGTGGAGTTTGAAGAGGCAAGTGCTGCACAAAGTGCAATTGAGGCTTCGCCAATTATAATCAATGGGCGCTCTGTTGTTGTTGAAGAAAAGAAATCTACAAATAGAGGCAAGGGACGATTCTCAACAGGAAGGGGGGCAGGATTTAGGAACGAGGGAGCAAGATCTCGTGGAAACTATGGAAATGGCAGAAGCTATGATCGTGGTGACTATAATGGCAGGGGTGATTTTGGATATAGGAATGGCAATCGTGGTGGAGGGTTTTCAAACCGTGGAGGTGATGGATATCATAGAAATGATCATATGGGAGGCAATGCTGGCCGTGTGAATCGCACTGGTGGGTTGGCTGTTAATTCGACAGCCAAAGCTACGTCTGTTCGTGTACCTGCTACTGCTTGA 1527 0.4519 MASSEQQAQARTTPAAIVVGNAFVDQYYHMLHESPEHVHRFYHEDSKLGRVEKDGFMGIATTLPGINEKILSLGYSEFDSEIISVDAQESYGGGVLVLVTGFMTRKDNVRQKFTQSFFLAPQDKGYFVLNDVFRYVDENEIQGSAADVESPVTPDQDPSVHVPEVEDKKAEDVDGEEVYNAENGHASFGEEEPPVPEVVDEIPDDSQMVIGCTSKIEEVPKKSYASIVKFMKEGIAPSSTLTTALVRSAPKSQEQQVTAALSPPSVTEATGSTANSNGSGNNQESEAEGYSIYMKGLPSNATTLLLENEFKKFGTIKSGGIQVRTQKGFCFGFVEFEEASAAQSAIEASPIIINGRSVVVEEKKSTNRGKGRFSTGRGAGFRNEGARSRGNYGNGRSYDRGDYNGRGDFGYRNGNRGGGFSNRGGDGYHRNDHMGGNAGRVNRTGGLAVNSTAKATSVRVPATA 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach6g01240 464 SMART rrm1_1 291 361 IPR000504 GO:0003723
Bach6g01240 464 CDD RRM_SF 292 361 - -
Bach6g01240 464 Gene3D - 8 139 - -
Bach6g01240 464 Pfam Nuclear transport factor 2 (NTF2) domain 19 135 IPR002075 -
Bach6g01240 464 Gene3D - 245 382 IPR012677 -
Bach6g01240 464 ProSiteProfiles Nuclear transport factor 2 domain profile. 19 135 IPR018222 -
Bach6g01240 464 MobiDBLite consensus disorder prediction 362 436 - -
Bach6g01240 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 356 IPR000504 GO:0003723
Bach6g01240 464 SUPERFAMILY RNA-binding domain, RBD 281 395 IPR035979 GO:0003676
Bach6g01240 464 SUPERFAMILY NTF2-like 16 136 IPR032710 -
Bach6g01240 464 MobiDBLite consensus disorder prediction 247 287 - -
Bach6g01240 464 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 16 436 IPR039539 -
Bach6g01240 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 365 IPR000504 GO:0003723
Bach6g01240 464 CDD NTF2 19 137 IPR018222 -
Bach6g01240 464 MobiDBLite consensus disorder prediction 144 173 - -
Bach6g01240 464 FunFam Nuclear transport factor 2 family protein 10 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach6g01240 Bach-Chr6 11510909 11515317 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach6g01240 274 370 Eukaryotic Initiation Factors Gene Family AT2G36660 34.000 3.89e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach6g01240 K24983 - gmx:100800392 575.089