Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach6g00774 ATGGGTCGAGGGAGAGTTGAACTGAAGAGGATAGAGAACAAAATCAACCGGCAGGTTACTTTCTCGAAAAGAAGGAACGGTTTGCTCAAGAAAGCCTATGAACTGTCTGTGCTGTGTGATGCTGAGATTGCCCTTATCGTTTTCTCTAGCCGTGGCAAGCTCTATGAATTTGGAAGCTCTGGTATTACCAAAACCCTCGAAAGATACCAGCGCTGCTCCTTTACTCCTCAAGACAGCACTGTTGAAATTGAAACTCAGAACTGGTTCCATGAGGTATCAAAGCTAAAGGCCAAGTATGAGTCTCTCCAAAGAACTCAAAGGCATTTGCTTGGGGAAGATCTTGGACCTTTGAGCGTGAAAGAGCTGATAAATCTTGAGAAGCAGCTTGAAGGAGCCCTAGCACAAGCTAGGCAAAGGAAGACACAAATTATGATTGAACATATGGAAGATCTTCGTAGAAAGGAACGCCACCTCGGAGATATTAACAAGCAGCTTAGGCTCAAGATTGAATCAGAGGGATATAATCTCAAAGCCAATGAAAGCTTGTGGAGCCCTACTTCAGCACCTGGAAACAGCAGCTTTCTCATCCACCCTTCTCAAGCTATCCCTATGGAATGTCAAGCAGAGCCTAATTTCTTGCAAATAGGGTAA 651 0.4439 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIVFSSRGKLYEFGSSGITKTLERYQRCSFTPQDSTVEIETQNWFHEVSKLKAKYESLQRTQRHLLGEDLGPLSVKELINLEKQLEGALAQARQRKTQIMIEHMEDLRRKERHLGDINKQLRLKIESEGYNLKANESLWSPTSAPGNSSFLIHPSQAIPMECQAEPNFLQIG 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach6g00774 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Bach6g00774 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bach6g00774 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bach6g00774 216 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach6g00774 216 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Bach6g00774 216 FunFam MADS-box transcription factor 1 13 86 - -
Bach6g00774 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bach6g00774 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bach6g00774 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bach6g00774 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bach6g00774 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bach6g00774 216 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach6g00774 216 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Bach6g00774 216 Coils Coil 119 142 - -
Bach6g00774 216 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach6g00774 Bach-Chr6 5717028 5720444 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach6g00774 1 216 MADS-box Gene Family AT2G45650 65.315 1.91e-99 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bach6g00774 K-box 3.6e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach6g00774 6 5717028 5720444 Bach6g00774 6 5717028 5720444 ECH
Bach6g00773 6 5701203 5709187 Bach6g00774 6 5717028 5720444 ECH