Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach6g00515 ATGTCAGACGGTGCTGAAATAGATGAGCGGGTGGACTTTGATGAGGAAAATTACATGGAAGAGATGGATGATGATGTTGAGGAACAAATAGATGAAGATGGAGTAGATGGAGGTGGTGATGAGAACGTTGACGGGAATGTTGAGGAACATGAGAACTCAGAGGCCAGCACAAAAGACCAATTGCCTGAAGACTCAACAGCAGAGGTTGCAGCATCTGTAGAAGATGAGCAAAACCTATCTTCCATTGATGAAGATGAGAAAGAGAAGCATGATGAACTTCTTGCCCTTCCTCCACATGGTTCTGAAGTTTTCATTGGTGGACTTCCTCGGGATGTGATTGAAGATGATTTGAGGGAATTGTGTGATTCAATAGGTGATATTCTTGAGGTGAGATTGATGAAAGATAGGGACACAGGAGAAGGTAAGGGCTATGCTTTTGTGGCATTTAAAACCAAAGAGGTAGCACAAAAGGCCATTGAAGAGTTACATAACAAGGAATTTAAGGGTAAAACTTTAAGGTGTTCAGTGTCTGAAACTAAACATAGATTGTTTATTGGTAATGTTCCAAAAAACTTGACTGAGGATGAGTTTAGGAAAGTCATTGAGGGTGTTGGTCCTGGAGTTGAAAACATTGAGCTCATAAAGGACCCTCAAAATCCAAGCAGGAACCGTGGGTTTGCTTTTGTTTTGTATTACAATAATGCCTGTGCTGATTATTCACGACAAAAGATGTCAAGTCCAAATTTTAAGCTAGATGGTAATACACCAACTGTCACATGGGCTGATCCAAAGAATTCACCTGATCACTCTGCTTCCTCACAGGTTAAAGCACTTTATGTGAAAAACATACCCAACAATACTACTACTGAACAACTCAAGGAACTATTTTGTCACCATGGGGAAGTAACAAAAGTGGTTATGCCACCGGGTAAAGCTGGAGGCAAACGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAGGCTCTAAAAGATACAGAAAAATATGAAATAGATGGGCAATTGTTGGAAGTTGTTCTTGCAAAGCCTCAGACTGAGAAAAAATCTGATGTCGGTTATGGCTACAATCCTGGGTTTCATCCAAACCATCCCCCATATCCTGGGCATGGTGGCTTTTCAGGAAATCCATATGGCTCTGTAGGGACTGGATATGGTGTGACTGCTGGTTTTCAACAGCCAATGATATATGGTAGAGGTCCGATGCCTGCAGGAATGCAGATGGTCCCGATGGTTTTACCGGATGGTCGAGTTGGATATGTACTTCAGCAGCCTGGTGTACAGATGCCAGCTCCTCGGCCTCGTCGGAGCAATGGCCCAGGTGGTCAGGCTGGGCGAGGAGGAGGTAGTGGTAGTGGTAACGAAGAAGGTAATCGTGGTAGAAGGTATCGACCCTATTAGTGGTAGAAAGCAGAGACGTTGTGTTTTCTGTGCCCACCTGATTTGGCGGGGTTGGGACTAGAGATGTGCTATTGCTTTTGCTACATCCTACAGACATAGAAAGAAAATCCCCCTCTCAACCTCTTTTCAAAGAAAAAATAAAGTAAAAAGAATAGAAAAAGAAGGTTAATTTAGGACTAGGAACAGTGATATTCTATGACTTAATGTTGTTGTCTGCTGCCATCTAGATGGATGGCAGCTGAGTAATTGTATTTCTTTTCTGCTTGTAATGCTTTTTGGCATAATTTATTGACAACCAGTAGATAATGAAGTTGATTTGATTTCAGACTT 1758 0.4198 MSDGAEIDERVDFDEENYMEEMDDDVEEQIDEDGVDGGGDENVDGNVEEHENSEASTKDQLPEDSTAEVAASVEDEQNLSSIDEDEKEKHDELLALPPHGSEVFIGGLPRDVIEDDLRELCDSIGDILEVRLMKDRDTGEGKGYAFVAFKTKEVAQKAIEELHNKEFKGKTLRCSVSETKHRLFIGNVPKNLTEDEFRKVIEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSSPNFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPNNTTTEQLKELFCHHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKALKDTEKYEIDGQLLEVVLAKPQTEKKSDVGYGYNPGFHPNHPPYPGHGGFSGNPYGSVGTGYGVTAGFQQPMIYGRGPMPAGMQMVPMVLPDGRVGYVLQQPGVQMPAPRPRRSNGPGGQAGRGGGSGSGNEEGNRGRRYRPY 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach6g00515 475 CDD RRM_SF 103 175 - -
Bach6g00515 475 MobiDBLite consensus disorder prediction 43 58 - -
Bach6g00515 475 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 182 262 - -
Bach6g00515 475 Gene3D - 182 262 IPR012677 -
Bach6g00515 475 Gene3D - 264 395 IPR012677 -
Bach6g00515 475 MobiDBLite consensus disorder prediction 435 475 - -
Bach6g00515 475 SUPERFAMILY RNA-binding domain, RBD 98 353 IPR035979 GO:0003676
Bach6g00515 475 SUPERFAMILY RNA-binding domain, RBD 182 269 IPR035979 GO:0003676
Bach6g00515 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 353 IPR000504 GO:0003723
Bach6g00515 475 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 181 - -
Bach6g00515 475 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 11 421 - -
Bach6g00515 475 SMART rrm1_1 277 349 IPR000504 GO:0003723
Bach6g00515 475 SMART rrm1_1 102 175 IPR000504 GO:0003723
Bach6g00515 475 SMART rrm1_1 182 259 IPR000504 GO:0003723
Bach6g00515 475 Gene3D - 14 181 IPR012677 -
Bach6g00515 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 263 IPR000504 GO:0003723
Bach6g00515 475 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 179 IPR000504 GO:0003723
Bach6g00515 475 MobiDBLite consensus disorder prediction 1 89 - -
Bach6g00515 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 173 IPR000504 GO:0003723
Bach6g00515 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 246 IPR000504 GO:0003723
Bach6g00515 475 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 346 IPR000504 GO:0003723
Bach6g00515 475 SMART rrm2_1 102 175 IPR003954 GO:0003676
Bach6g00515 475 MobiDBLite consensus disorder prediction 8 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach6g00515 Bach-Chr6 3753288 3756097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach6g00515 103 429 Eukaryotic Initiation Factors Gene Family AT1G71770 26.963 1.10e-22 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach6g00515 K13161 - gmx:100790907 689.878