Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach6g00442 ATGGCTTTGGTTCCTCAGCAAAACCTTGCGGCAAGAAACCCAAATCTCCGGAGACAAAATATCGAGGCAAACAGAGTGCAGGAGGAAAACACGAGGCGTTTCGTAACCTTTTCGAAACGCAAAGAAGGGATAATCAACAAGGCTTGTGAACTATCAGTTCTATGCAAAGCACACAGCGCTGTCATTGTCTTCTCTCCAAATAACGACGATGGGCTCTATACTTTTGGGAACCCTAACCCTGATTCAGTAATCCATCGTTATCTCTCAGCTGGTGCTACTGGGTCTTTGTTGTCAAATCCTGATCATGATCATCCAATGGAGGAAATATCGCATGCTTCTCAGCAATATGAAATTTCTAGGCAACAGTTGGAAGAAGAGAAAAACCGCTTGGCGATCATCATGGCAAGTCGCGCCACCGCCGTAGAGGGTAGCAACGGTGGCTTTTGGTGGGATCAATCCATTGAGGAGATGTCTTTGGAGGATCTTGAGGCCTTTGCAGACTCCTTACAAAAGCTAAAGCAAAATGTCTCCACCAGAACCAATCATCACATGATGACGATGGAGCTGCCGCCGCCGCCTGAGCTTCCTTATCTGTTTGTTATGAACGGTGTTATCCCCTTTGCTGAGGCATACGATTTGGACCTGGGTTTTGAGTGA 657 0.4673 MALVPQQNLAARNPNLRRQNIEANRVQEENTRRFVTFSKRKEGIINKACELSVLCKAHSAVIVFSPNNDDGLYTFGNPNPDSVIHRYLSAGATGSLLSNPDHDHPMEEISHASQQYEISRQQLEEEKNRLAIIMASRATAVEGSNGGFWWDQSIEEMSLEDLEAFADSLQKLKQNVSTRTNHHMMTMELPPPPELPYLFVMNGVIPFAEAYDLDLGFE 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach6g00442 218 Coils Coil 106 133 - -
Bach6g00442 218 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Bach6g00442 218 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Bach6g00442 218 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Bach6g00442 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 68 IPR002100 GO:0003677|GO:0046983
Bach6g00442 218 Gene3D - 30 103 IPR036879 GO:0003677|GO:0046983
Bach6g00442 218 PANTHER MADS BOX PROTEIN 18 178 - -
Bach6g00442 218 SMART madsneu2 16 78 IPR002100 GO:0003677|GO:0046983
Bach6g00442 218 ProSiteProfiles MADS-box domain profile. 16 77 IPR002100 GO:0003677|GO:0046983
Bach6g00442 218 SUPERFAMILY SRF-like 26 103 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach6g00442 Bach-Chr6 3202835 3203491 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach6g00442 18 178 Type I MADS-box Gene Family AT5G60440 33.529 2.64e-20 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bach6g00442 SRF-TF 5.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach6g00442 - - qsa:O6P43_023100 131.724