Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach6g00431 ATGTCCCTCTTTCGTCTAGCGCCGATGGTCCTTTTGCTTCGCCCACATCGCAGAAGAATGCAGAAACGCAGCACCCGAAGTGAAGAACACGAACGGGGAGCAGAACCAGAAAAGGTGGAGCAGAGTCATTCCTCGCGTAGCAGAACCAGACAAACTGACACCTCAGCTCGAGCATCCATGGCGCCAACCACTGAGCTTGACGACGACGTCCATTTCCATCTTGTGCTAATTCTTCCATTTTCCTTTCTGCGATTGCTTGTGCTGAAGCTCCATCTAAGTTCAGCTCTCATGTGCCGACATCCATTTTTTGCGTCTGGGTCGGGTGGTTGGCAAAGTCTGGCCGACACAGGTGGTGGGTCTGCAGTTCTGCAAAACATCATTCGAACCCTCGTTCTGTCGGGCTCTTTCTCTCTCTCGTACAAAGCTTCGGACTACAGAGAGCACAGAGCAAATCCTGAGCTTGTAACCATGGCCACAACCACCACTACGGCAGCGCCGCGACAACTGTCGCAGAAGGAGGCTGACATCCAGATGATGTTGGCCGCCGAGGTCCATCTTGGAACCAAAAACTGCGACTTTCAAATGGAACGCTACGTCTTCAAGCGCCGCAACGATGGCATTTACATTATCAACCTTGGTAAAACATGGGAAAAGCTTCAACTTGCTGCAAGGGTTATTGTTGCCATTGAGAATCCACAGGATATTATTGTTCAGTCTGCCAGGCCTTATGGTCAGAGAGCTGTGCTTAAGTTTGCTCAGTACACCGGCGCTCATGCAATTGCAGGAAGGCATACTCCTGGAACATTTACTAATCAGCTCCAGACATCTTATAGTGAGCCTCGCCTTCTCATTCTTACTGATCCCAGAACCGATCATCAGCCCATTAAGGAAGCTGCTTTGGGAAATATACCAACTATTGCTTTCTGTGACACTGATTCTCCCATGCGTTACGTTGACATTGGCATTCCTGCCAATAATAAGGGAAAGCACAGCATTGGTTGTCTCTTTTGGCTTCTAGCAAGGATGGTACTGCAAATGCGGGGTACTATTCGTCCTGGACTTAAGTGGGATGTGATGGTCGATTTATTCTTCTATAGAGAACCTGAGGAGGCGAAGGAACAAGAAGAAGATGAAGCACCTCCTGCCCCTGAGTATGCCATTGCAGACTTCAATGCTGGTGCTATTGGTGGCATCGGTGCTGATGGCGAGTGGCCTGCTGCTGCAATTGATCAACCATGGGCTGAGGCAATTCCACCACAACCTATACCAGCAGTTCCTGCTGTCGGCTGGACCCAAGAAGCTGCAGTTCCTGCTGTCGGCTGGACCCAAGAAGCTGTTGCAGGAGATTGGGCCGAGTCTGTTCCACCACCAGCACCAGCTCCAGCTCCAGCACCACAACTTCCTCCAACCGGAATTGAAAACGTTCCTGCTACAGGCTGGGATTAACTTTACCCGAGATTTTGATCCTGTGGTCTTGCATCCATAATTTACTTCCCCCTTCCCTTCCCGTTCCTGAAGTGAAATCCGTATCAGTATTTTTGTAGGTAAAAAA 1552 0.4981 MSLFRLAPMVLLLRPHRRRMQKRSTRSEEHERGAEPEKVEQSHSSRSRTRQTDTSARASMAPTTELDDDVHFHLVLILPFSFLRLLVLKLHLSSALMCRHPFFASGSGGWQSLADTGGGSAVLQNIIRTLVLSGSFSLSYKASDYREHRANPELVTMATTTTTAAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSYSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKEQEEDEAPPAPEYAIADFNAGAIGGIGADGEWPAAAIDQPWAEAIPPQPIPAVPAVGWTQEAAVPAVGWTQEAVAGDWAESVPPPAPAPAPAPQLPPTGIENVPATGWD 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach6g00431 481 PRINTS Ribosomal protein S2 signature 176 194 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach6g00431 481 PRINTS Ribosomal protein S2 signature 206 215 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach6g00431 481 PRINTS Ribosomal protein S2 signature 255 272 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach6g00431 481 PRINTS Ribosomal protein S2 signature 297 308 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach6g00431 481 PRINTS Ribosomal protein S2 signature 280 297 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach6g00431 481 PRINTS Ribosomal protein S2 signature 318 332 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach6g00431 481 MobiDBLite consensus disorder prediction 17 62 - -
Bach6g00431 481 FunFam 40S ribosomal protein SA 175 381 - -
Bach6g00431 481 Hamap 40S ribosomal protein SA [rps-0]. 163 407 IPR027498 GO:0003735|GO:0006412|GO:0015935
Bach6g00431 481 ProSitePatterns Ribosomal protein S2 signature 2. 280 304 IPR018130 GO:0003735|GO:0005840|GO:0006412
Bach6g00431 481 Gene3D - 175 380 - -
Bach6g00431 481 PANTHER 40S RIBOSOMAL PROTEIN SA 164 459 IPR005707 GO:0003735|GO:0006412|GO:0015935
Bach6g00431 481 CDD RPS2 179 345 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach6g00431 481 ProSitePatterns Ribosomal protein S2 signature 1. 176 187 IPR018130 GO:0003735|GO:0005840|GO:0006412
Bach6g00431 481 MobiDBLite consensus disorder prediction 451 481 - -
Bach6g00431 481 SUPERFAMILY Ribosomal protein S2 171 361 IPR023591 -
Bach6g00431 481 MobiDBLite consensus disorder prediction 454 470 - -
Bach6g00431 481 Pfam Ribosomal protein S2 179 274 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach6g00431 481 Pfam Ribosomal protein S2 277 343 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bach6g00431 481 MobiDBLite consensus disorder prediction 22 47 - -
Bach6g00431 481 NCBIfam 30S ribosomal protein S2 172 367 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach6g00431 Bach-Chr6 3089904 3093356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach6g00431 157 441 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 73.540 1.91e-152 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach6g00431 K02998 - gmx:548014 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach6g00431 6 3089904 3093356 Bach6g00431 6 3089904 3093356 ECH