Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach6g00415 GCCAGACTTGGGACCCCTTAACCCTAATCGAGAAACTTACTTTCCAGGAAAATCAGCCAGAAAAATGCAGAATCACAGGCTAAAGCAGCAGCAGCAAGCTTTGATGCAACAAGCTCTTCTTCAGCAACAGTCTCTCTATCATCCTGGCCTCTTAGCTCCTCCTCAGATTGAGCCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTACGTGGGGAACATCCATACACAGGTGACTGAACCACTTCTGCAAGAAGTTTTTTCAAATGCTGGCCCTGTTGAAGGATGCAAAGTTATCAGAAAGGAGAAGTCATCATATGGATTCATTCATTATTTTGATCGCAGATCTGCCGCCCTTGCTATATTAACTCTTAATGGAAGGCATTTGTTTGGGCAGCCTATCAAAGTTAACTGGGCATACGCTAGTGGTCAGAGAGAGGATACATCAGGTCATTACAACATATTTGTTGGTGATCTTAGTCCAGAGGTTACTGATGCTACACTGTTCGCATGCTTTTCTGTTTATCCCAGTTGTTCAGATGCAAGGGTAATGTGGGATCAGAAAACTGGCCGATCAAGGGGTTTTGGGTTTGTTTCCTTCCGTAATCAACAGGATGCTCAAAGCTCAATAAATGATTTGACTGGTAAGTGGCTTGGTAGTAGACAAATACGTTGTAACTGGGCAACAAAGGGTGCTGGTGCTATTGAAGACAAGCAAAACTCAGACACCAAGAGTGTGGTTGAACTAACAAATGGCTCATCTGAAGATGGTAAAGAGACATCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACCACTGTCTATGTGGGCAATCTTGCTCCAGAGGCAAGACTATTTCCCTTATCTGTATTTTTCCTTTCTTGGGTAACCCAGCTTGATCTGCATCGCCACTTCCATGCACTTGCAGCTGGTGTAATTGAGGAGGTCCGTGTCCAGCGTGACAAGGGGTTTGGTTTTGTGAGGTATAGTTCTCATGCTGAAGCAGCTCTCGCTATTCAGCTCGGGAATACTCAGTCTATCCTCTGCGGAAAGCAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCGCCTGGAACTGCTTCAAATCCTCTTCCACCACCTGCTGCTCCACCTGTGCCAGCGTTCTCTGCTGCAGATATTTTGGCCTATGAGCGACAGCTTGCAATGAGCAAGATGGGCGGAGTCCATGCCCTGATGCATCCCCAAGGGCAGCATCCTCTAAAACAAGCGGCAATTGGAGCGAGCCAAATATATGATGGTGGCTTCCAGAATGTTGCTGCTGCACAACAACTGATGTACTACCAGTAAAATAACAAGGTTATTGTGATATGAGTTAATCCTATCTATACATCCTACCTTGTTCACATCCAATCGTATTAAACTCTAGGAAGCCTTCTTTTTTATTATATACATATATTTTTTTTTTCTTACGGTGGCGAGGCAGTTACCCCCACCATATTAGATGTGTCAACATTTGTAAGGGTTTGTATCTTGTATGCGGTTTTATGCTTAATAGTGATGAGTGGCTATAATTTTAAGAGTTGGC 1592 0.4454 MQNHRLKQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSNAGPVEGCKVIRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSSINDLTGKWLGSRQIRCNWATKGAGAIEDKQNSDTKSVVELTNGSSEDGKETSNSDAPENNPQYTTVYVGNLAPEARLFPLSVFFLSWVTQLDLHRHFHALAAGVIEEVRVQRDKGFGFVRYSSHAEAALAIQLGNTQSILCGKQIKCSWGSKPTPPGTASNPLPPPAAPPVPAFSAADILAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGASQIYDGGFQNVAAAQQLMYYQ 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach6g00415 429 SMART rrm1_1 54 123 IPR000504 GO:0003723
Bach6g00415 429 SMART rrm1_1 260 343 IPR000504 GO:0003723
Bach6g00415 429 SMART rrm1_1 139 212 IPR000504 GO:0003723
Bach6g00415 429 FunFam oligouridylate-binding protein 1-like isoform X2 136 231 - -
Bach6g00415 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 210 IPR000504 GO:0003723
Bach6g00415 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 334 IPR000504 GO:0003723
Bach6g00415 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 121 IPR000504 GO:0003723
Bach6g00415 429 CDD RRM2_PUB1 137 216 - -
Bach6g00415 429 Gene3D - 236 351 IPR012677 -
Bach6g00415 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 127 IPR000504 GO:0003723
Bach6g00415 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 259 347 IPR000504 GO:0003723
Bach6g00415 429 Gene3D - 137 218 IPR012677 -
Bach6g00415 429 Gene3D - 1 136 IPR012677 -
Bach6g00415 429 SUPERFAMILY RNA-binding domain, RBD 37 131 IPR035979 GO:0003676
Bach6g00415 429 CDD RRM1_PUB1 55 125 - -
Bach6g00415 429 MobiDBLite consensus disorder prediction 223 256 - -
Bach6g00415 429 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 51 350 - -
Bach6g00415 429 SUPERFAMILY RNA-binding domain, RBD 249 354 IPR035979 GO:0003676
Bach6g00415 429 SUPERFAMILY RNA-binding domain, RBD 132 218 IPR035979 GO:0003676
Bach6g00415 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Bach6g00415 429 FunFam oligouridylate-binding protein 1B-like isoform X2 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach6g00415 Bach-Chr6 2966218 2972167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach6g00415 48 348 Eukaryotic Initiation Factors Gene Family AT4G34110 28.165 1.17e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach6g00415 K13201 - gmx:100781227 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach6g00415 6 2966218 2972167 Bach6g00415 6 2966218 2972167 ECH