Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach6g00395 ATGAGAATTGGTAGTGTGTTGGAGAGGAAGGATGAGAAGGGCAGGGCCTGCCAAAGCAAGAACCTTGTACGGTACATAATTCATATAATTAGGCAGATCTTTGTCAAAATTTTGACGGGCAAGACCATCACCCTTGAGATAGAAAGTTCTGATACCATTGACAGTGTCAAAGCCAAGATCCAAGACAAGGAAGGGATCCCATCTGACCAACAAAGGCTCATCTTTGCCGGACAGCAACTCGAGGATGGTCGCACACTTGCTGACTACAATATACAAAAGGAATCCACTCTCCGCCTTGTGCTTCGTCTCAGAGGTGGCATGCAAATCTTCGTCAAGACCCTGACTGGGAAAACCATCACTCTCGAGGTTGAATCCTCAGATACAATTGATAATGTTAAAGCCAAAATCCAAGACAAAGAGGGTATCCCTCCAGATCAGCAGAGGCTAATTTTTGCTGGGAAACAGCTAGAAGACGGTCGAACTCTCGCTGATTATAATATCCAGAAGGTTATCGACCCTTCATTAGGTTCTTCGGTTGAGAGGTGGAATGGAAATTTTTGTGAAGGCTCTCACCGTATAAGGCTACGGAAAGAGGGAAAAATTTGCCTCACATATTCTCTTAAGGTGGAAAGCCCATTGATAATGTGAAAGCAAAAATCCAGGACAAAGAGGGCATTACACCAGATCAGCAAAGACTTATGTTCGCTGGAAAGCAGCTAGAAGATGGCCGCACTCTCGCGGATTACAATATCCAAAAGGAATCGACCCTTCATTTGGTGCTTCGGTTAAGGGGTGGTATGCAAATTTTTGTGAAGACTCTGACCGGAAAAACTTTAACTTTAGAGGTTTTCTGATACAATTGATAATGTGAAAGCCAAGATACAGGACAAGGAAGGTATCCCTCCTGATCAGCAGAGACTTATCTTTGCTGGGAAGCAACTGGAAGATGGGCGTACCCTTACTGACTACAACATTCAAAAGGAATCCACTTTGCACTTGGTTTTGCGACTTCGTGGTGGAAGGCAGATTTGTGTCAAGACCCTGACTGGTAAGACTATTACTTTGGAGGTGGAAAGCTCTGATACTATTGATAACGTGAAGGCAAAGATTCAGGACAGAGGGTATTCCCCCAGATCAGCAGAGGCTAATTTTTGCCCGGAAGCAATTGGAAGATGGCCGTACCTTGTCTGATTACAATATCCAAAAGGAGTCTACTCTCCATGTTGTTCTTCGCCTCCGTGGTGGATTTTAAGCCGGGGTTGGTTGCTGTAGCTGTGTTTCTGTTGTAGTTCTCTGGTTATTGGTTAATGGTTCTTGTTTAGTAATATTTCTTTGTATTCAGTCATTTAGTACATGAACAGAAACTCATGGATCATTAGTAATGGAGTATCTGCTGG 1397 0.4366 MRIGSVLERKDEKGRACQSKNLVRYIIHIIRQIFVKILTGKTITLEIESSDTIDSVKAKIQDKEGIPSDQQRLIFAGQQLEDGRTLADYNIQKESTLRLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKVIDPSLGSSVERWNGNFCEGSHRIRLRKEGKICLTYSLKVESPLIM 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach6g00395 215 ProSitePatterns Ubiquitin domain signature. 133 158 IPR019954 -
Bach6g00395 215 SMART ubq_7 107 176 IPR000626 GO:0005515
Bach6g00395 215 SMART ubq_7 31 102 IPR000626 GO:0005515
Bach6g00395 215 ProSitePatterns Ubiquitin domain signature. 57 82 IPR019954 -
Bach6g00395 215 PANTHER UBIQUITIN 32 108 - -
Bach6g00395 215 PRINTS Ubiquitin signature 83 104 IPR019956 -
Bach6g00395 215 PRINTS Ubiquitin signature 41 61 IPR019956 -
Bach6g00395 215 PRINTS Ubiquitin signature 62 82 IPR019956 -
Bach6g00395 215 Pfam Ubiquitin family 109 169 IPR000626 GO:0005515
Bach6g00395 215 Pfam Ubiquitin family 33 104 IPR000626 GO:0005515
Bach6g00395 215 SUPERFAMILY Ubiquitin-like 106 169 IPR029071 -
Bach6g00395 215 Gene3D - 107 209 - -
Bach6g00395 215 Gene3D - 30 106 - -
Bach6g00395 215 ProSiteProfiles Ubiquitin domain profile. 107 169 IPR000626 GO:0005515
Bach6g00395 215 FunFam Polyubiquitin 11 108 176 - -
Bach6g00395 215 ProSiteProfiles Ubiquitin domain profile. 31 106 IPR000626 GO:0005515
Bach6g00395 215 FunFam Ubiquitin-60S ribosomal protein 31 107 - -
Bach6g00395 215 SUPERFAMILY Ubiquitin-like 25 106 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach6g00395 Bach-Chr6 2823455 2826615 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach6g00395 107 183 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 75.556 2.87e-40 132