Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach6g00366 ATGGGGAACTACACGAGCAAGCAGAGGAAGAAAAGGGCAGAGACTATAACAAATTTCTTCTATGTATATAAAATTGGAGAACTCACAGCAGTCATATCTACCCAGGATCTAAACAAACAAGAAAGCCTCGCTCAGCTCTCAAAGGCCTCTTTTGCTCCTTCCACTACTCTGTCACATAAAACTGTTACTCGCAAGCATTCAGCATCACTACCAATTATGGCAGCAGAGGGAACACAGTTTGATGGTCGTCAATATGATGCTAAAATGAGTGAATTGCTTTCTACTGATGGACAAGAATTTTTCACTTCATATGATGAGGTCTGTGAAACTTTTGATGCCATGGGATTACAGGAAAATCTTCTGAGAGGCATTTATGCTTATGGTTTTGAGAAGCCTTCAGCAATCCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTTGATGTGATCCAGCAGGCTCAATCTGGAACTGGGAAGACAGCAACATTCTGCTCTGGGATTCTGCAGCAGCTTGATTATGGATTGGTTCAGTGCCAGGCCTTAGTTTTAGCACCTACAAGGGAACTGGCACAGCAAATTGAGAAGGTTATGCGAGCCCTTGGTGATTACCTTGGCGTTAAGGTTCATGTTTGTGTAGGTGGGACAATTGTCCGGGAGGATCAGCGCATCCTACAAGCTGGTGTCCATGTTGTTGTTGGTACTCCTGGTCGTGTGTTTGACATGCTAGGGAGGAAGTCACTTCGTCCAGATCACATAAGGATGTTTGTTTTGGATGAGGCTGATGAAATGCTCTCACGTGGTTTCAAGGACCAGATCTACGACATCTTCCAGCTACTACCAGGAAAAATTCAGGTTGGAGTCTTCTCTGCTACAATGCCACCAGAAGCTCTTGAGATTACAAGGAAGTTCATGAATAAGCCGGTGAGAATCTTGGTAAAGCGTGATGAACTGACCCTGGAGGGTATCAAGCAGTTCTATGTCAATGTTGAAAAGGAAGAGTGGAAGCTGGAAACTTTATGTGACCTCTACGAGACATTGGCCATCACCCAGAGTGTCATTTTCGTTAACACCCGTCGCAAGGTGGACTGGCTCACCGACAAGATGCGAAGCAATGACCATACAGTGTCAGCCACCCACGGTGACATGGATCAAAACACCCGGGATATAATTATGCGTGAATTTCGATCTGGGTCTTCTCGAGTTCTCATTACCACTGACCTCTTGGCTCGTGGTATAGATGTGCAACAAGTTTCTCTTGTGATAAACTATGATCTGCCAACCCAACCTGAAAATTATCTTCATCGTATAGGTCGAAGTGGACGGTTTGGAAGAAAGGGTGTTGCTATAAACTTTGTGACACTTGATGATGCCAGAATGCTGTCTGATATTCAGAAGTTCTATAATGTCACCGTAGAGGAGCTGCCATCAAATGTTGCTGATCTGCTCTGATGAGTTAATTTTTGTAGTTTAAGTCATCAGGGCTTCTGAGATTTTGACACTACTATTTTATTTAGTCCTTTCTTGTCTTATTCTTCCTACCCAATTAGGCATCTGACCATATTTATAATGGATTTTTATAAATTTAAAGTTAGAATTCAT 1599 0.4303 MGNYTSKQRKKRAETITNFFYVYKIGELTAVISTQDLNKQESLAQLSKASFAPSTTLSHKTVTRKHSASLPIMAAEGTQFDGRQYDAKMSELLSTDGQEFFTSYDEVCETFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHVCVGGTIVREDQRILQAGVHVVVGTPGRVFDMLGRKSLRPDHIRMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDARMLSDIQKFYNVTVEELPSNVADLL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach6g00366 482 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 109 137 IPR014014 GO:0003724
Bach6g00366 482 SMART helicmild6 362 443 IPR001650 -
Bach6g00366 482 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 310 IPR014001 -
Bach6g00366 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 463 IPR027417 -
Bach6g00366 482 Gene3D - 318 482 IPR027417 -
Bach6g00366 482 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 321 482 IPR001650 -
Bach6g00366 482 FunFam Eukaryotic initiation factor 4A-II 97 316 - -
Bach6g00366 482 Gene3D - 99 317 IPR027417 -
Bach6g00366 482 CDD SF2_C_DEAD 322 452 - -
Bach6g00366 482 Pfam Helicase conserved C-terminal domain 335 443 IPR001650 -
Bach6g00366 482 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 256 264 IPR000629 -
Bach6g00366 482 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 105 466 - -
Bach6g00366 482 SMART ultradead3 128 325 IPR014001 -
Bach6g00366 482 Pfam DEAD/DEAH box helicase 134 295 IPR011545 GO:0003676|GO:0005524
Bach6g00366 482 CDD DEADc_EIF4A 113 311 - -
Bach6g00366 482 FunFam Eukaryotic initiation factor 4A-III 317 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach6g00366 Bach-Chr6 2647390 2651826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach6g00366 73 482 Eukaryotic Initiation Factors Gene Family AT1G72730 87.835 0.0 760
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach6g00366 K03257 - gmx:100817948 780.4