Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach6g00120 ATGCCAACTAGTTCCAGTACTGTGAAGGCGGGAACCTCGTCGGAAGAAATCATCCGGCAACCGGCTGTGATGGTTTCAGGCGAGCCCAGTGAGTCTTCGTCCTCCTCCTCCGCATCCTTGTCGAATTTGACCCAAGCACTTCCTTTCTCTTCTGGAAACCCTAGAATCGAAGAGACTAGAGGCGTCATGCATCTCTATCGCGAGGATCCCGCTTCATCATCGACTTCTGATCTTCCTGTTGGGCGGAAGCCACTCATCTGTGTGCTTGGAGTGCCAAATCATATGACATATGCGGATTTCTGTCAGTTCTGTGGTTCATTTGTTCAGCATATCTTAGAGATGCGGATTGTCAGGTTCATCTTAAATGATGGGATGGAGGGCCAATACAGTGTTTTAATTCGCTTTGACGATCAAGAGTCTACTGACAGTTTCTACAAGCATTATAATAGGCGCCGTTTCTCATCCCTGGAGGTGGAGATTTGTCGCGTGCTTTTCATCTTAGATGTGCTGTATACTGGTTCAATTGAACATGCACAAGCATCTAATACTAGTTCAACTGAACAACCTAATTGTCCAGTTTGCCTTGAACGATTAGATCAAGACACAAGTGGAATTCTTACAACTATATGCAATCATTCTTTCCACTGTTCCTGTATCTCAAAATGGGAAGATTCTTCTTGTCCAGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTCTGTCAAACCACTGAGAACCTCTGGATATGTGTTATCTGTGGATTTGTTGGCTGTGGAAGATATAAAGGAGGACATGCTATTATACACTGGAGAGAAACACAGCATTGTTATTCCCTAGAAGTTGATACACAACGTGTGTGGGATTATGTGGGAGACAACTATGTACACAGACTAATCCAAACCAAAACAGATGGAAAGTTGGTGGAGTTGAATTCGCACTGTGCGCACACCAACAAGGGGTGTGGAAATTGCAACTGTGAAGACACTGCCATGAGTGAGGCTGTACTGAATAGTAAAGTTGAAGCTATTGTCAATGAATACAATGAATTGCTTGCTAGTCAACTTGAAAACCAAAAATTATACTTTGAGTCCATACTACAAGAAGTAAACGAAGAAACTCAAAGAGAAATTTCTAATGCTGTTGAGAAGGCAGTCACTCTTAAACTGCAGAAGACGCAGTCTAAGGTTGATAGATGTATTAAAGAGAAGAAATTTCTCGATGATCTTAATGAGAATCTTCTGAAAAATCAGGAGATTTGGACATCAAAGTTACTTGAGATTGAAGAGAGGGAAAAAAAAGCCTTAAAACTGAGGGATGATAAAGTAAAGGAGCTGGAAGAGCAGCTTGGTGAGCTGATGCTTTGTCTTGGAGCTGGGAAGACTACAGAAGCAGAACATCTATCAGATTCAAATGAAATTAAAGATTGATAGATAGAATCCTCATCAACCAGTGGTTCCGAGGCAGGGAAGAAAG 1486 0.4199 MPTSSSTVKAGTSSEEIIRQPAVMVSGEPSESSSSSSASLSNLTQALPFSSGNPRIEETRGVMHLYREDPASSSTSDLPVGRKPLICVLGVPNHMTYADFCQFCGSFVQHILEMRIVRFILNDGMEGQYSVLIRFDDQESTDSFYKHYNRRRFSSLEVEICRVLFILDVLYTGSIEHAQASNTSSTEQPNCPVCLERLDQDTSGILTTICNHSFHCSCISKWEDSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGFVGCGRYKGGHAIIHWRETQHCYSLEVDTQRVWDYVGDNYVHRLIQTKTDGKLVELNSHCAHTNKGCGNCNCEDTAMSEAVLNSKVEAIVNEYNELLASQLENQKLYFESILQEVNEETQREISNAVEKAVTLKLQKTQSKVDRCIKEKKFLDDLNENLLKNQEIWTSKLLEIEEREKKALKLRDDKVKELEEQLGELMLCLGAGKTTEAEHLSDSNEIKD 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach6g00120 479 ProSiteProfiles Zinc finger RING-type profile. 191 231 IPR001841 -
Bach6g00120 479 Pfam BRCA1-associated protein 2 79 178 IPR011422 -
Bach6g00120 479 PANTHER BRCA1-ASSOCIATED PROTEIN 12 477 - -
Bach6g00120 479 CDD RRM_BRAP2_like 86 169 - -
Bach6g00120 479 ProSiteProfiles Zinc finger UBP-type profile. 225 318 IPR001607 GO:0008270
Bach6g00120 479 MobiDBLite consensus disorder prediction 1 39 - -
Bach6g00120 479 Coils Coil 374 394 - -
Bach6g00120 479 SUPERFAMILY RING/U-box 181 231 - -
Bach6g00120 479 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 232 IPR013083 -
Bach6g00120 479 SMART ring_2 191 230 IPR001841 -
Bach6g00120 479 Pfam Zn-finger in ubiquitin-hydrolases and other protein 242 301 IPR001607 GO:0008270
Bach6g00120 479 Coils Coil 432 452 - -
Bach6g00120 479 CDD RING-H2_BRAP2 189 232 IPR047243 -
Bach6g00120 479 SMART Zf_UBP_1 241 290 IPR001607 GO:0008270
Bach6g00120 479 Pfam Ring finger domain 190 231 IPR001841 -
Bach6g00120 479 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 313 IPR013083 -
Bach6g00120 479 SUPERFAMILY RING/U-box 207 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach6g00120 Bach-Chr6 868032 871347 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach6g00120 187 231 C3H Transcription Factor Family AT1G72220 48.936 2.18e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach6g00120 K10632 - cave:132188546 751.125