Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach6g00062 TCTGCTCCCATATTGCAATAGAACGCTTGCTGTTGCCGGTGTCATTCTTATAACTCGGCGACATGAAGCTCACTGTGAAGACGTTGAAAGGAAGCCACTTTGAAATCAGTGTTCAGCCCTTCGATACTATTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGAAAAAATAATTATCCATGTGGACAGCAATTGCTGATTCACAATGGCAAGGTGTTGAAAGATGAAACTACACTAGCTGACAACAAGGTCTCTGAAGATGGGTTTCTTGTTGTCATGCTTAGCAAGAGCAAAACTTTGGGTTCTTCTGGGGCTTCATCCACTCAGCCTACTAGTAGTCCACTGACTACTGTATCAACTTCAAATCCGACTCCTGCTTCTCAACCACCAGTACAAACTCAGGCAGCAAAAGACAGTACATCTTCCACTGACAGCACAACTGCCAACGCTGTGCCTACAGATACTTATGGTCAAGCTGCATCAAATTTAGTCGCCGGTAGTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGTGGGGGCAGCTGGGACAGAGAAACAGTTACTCATGCACTTCGGGCAGCTTACAATAACCCAGAGCGTGCTGTAGATTACTTGTATTCTGGAATTCCTGAAGCAGCAGAAGTTGCTGTACCAGTTGCTCATTACCCAGCTAGTCAGACTACTGAAATAGGTGGGGCTACTGCCGGAGCTGTTTCTGGGGGACCTAACTCATCTCCCTTAAATATGTTTCCGCAGGAGACAATTTCAGGTGCTGGTGCTGGACTTGGATCTGTTGACTTCCTTAGAAACAATCCCCAATTTCAAGCATTGCGTTCAATGGTGCAATCCAACCCACAAATTCTACAGCCCGTGCTTCAGGAGCTTGGAAAGCAGAATCCTCATCTTTTAAGACTAATTCAAGAGCATCATGCTGAGTTCCTCCAGTTAATAAATGAACCCGTTGAGGGTTCTGAAGGTGATATATTTGACCAACAAGAGCAAGACATGCCACATGCCGTCAATGTTACGCCAGCTGAGCAGGAAGCAATTGGAAGGCTGGAGGCGATGGGATTTGATAGAGCCTCAGTGATAGAGGCATTTTTGGCTTGTGATCGTGATGAGCAATTGGCGGCAAACTACTTATTGGAGAATGCTGGGGATTTTGAGGATTGA 1181 0.4513 MKLTVKTLKGSHFEISVQPFDTIMAVKKNIEDVQGKNNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSSGASSTQPTSSPLTTVSTSNPTPASQPPVQTQAAKDSTSSTDSTTANAVPTDTYGQAASNLVAGSNLEQTIQQIMDMGGGSWDRETVTHALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHYPASQTTEIGGATAGAVSGGPNSSPLNMFPQETISGAGAGLGSVDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPHLLRLIQEHHAEFLQLINEPVEGSEGDIFDQQEQDMPHAVNVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach6g00062 372 SMART ubq_7 1 75 IPR000626 GO:0005515
Bach6g00062 372 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 147 190 IPR015940 -
Bach6g00062 372 SMART uba_6 149 189 IPR015940 -
Bach6g00062 372 SMART uba_6 328 365 IPR015940 -
Bach6g00062 372 Pfam XPC-binding domain 248 302 IPR015360 GO:0003684|GO:0006289|GO:0043161
Bach6g00062 372 Gene3D - 237 303 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bach6g00062 372 SMART CBM 245 288 IPR006636 -
Bach6g00062 372 NCBIfam UV excision repair protein Rad23 1 371 IPR004806 GO:0006289
Bach6g00062 372 MobiDBLite consensus disorder prediction 80 134 - -
Bach6g00062 372 SUPERFAMILY UBA-like 146 197 IPR009060 GO:0005515
Bach6g00062 372 SUPERFAMILY UBA-like 307 369 IPR009060 GO:0005515
Bach6g00062 372 CDD Ubl_Rad23 1 74 - -
Bach6g00062 372 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Bach6g00062 372 FunFam UV excision repair protein RAD23 1 80 - -
Bach6g00062 372 SUPERFAMILY Ubiquitin-like 1 85 IPR029071 -
Bach6g00062 372 CDD UBA1_Rad23_plant 143 192 - -
Bach6g00062 372 SUPERFAMILY XPC-binding domain 245 310 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bach6g00062 372 PRINTS DNA repair protein Rad23 signature 273 295 IPR004806 GO:0006289
Bach6g00062 372 PRINTS DNA repair protein Rad23 signature 354 369 IPR004806 GO:0006289
Bach6g00062 372 PRINTS DNA repair protein Rad23 signature 322 338 IPR004806 GO:0006289
Bach6g00062 372 PRINTS DNA repair protein Rad23 signature 339 353 IPR004806 GO:0006289
Bach6g00062 372 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Bach6g00062 372 FunFam UV excision repair protein RAD23 homolog 319 367 - -
Bach6g00062 372 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 326 366 IPR015940 -
Bach6g00062 372 Gene3D - 142 192 - -
Bach6g00062 372 FunFam UV excision repair protein RAD23 B 237 303 - -
Bach6g00062 372 FunFam UV excision repair protein RAD23 homolog 142 192 - -
Bach6g00062 372 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 361 - -
Bach6g00062 372 Gene3D - 319 367 - -
Bach6g00062 372 Gene3D - 1 80 - -
Bach6g00062 372 Pfam UBA/TS-N domain 328 363 IPR015940 -
Bach6g00062 372 Pfam UBA/TS-N domain 149 187 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach6g00062 Bach-Chr6 488425 495365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach6g00062 1 75 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.000 3.80e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach6g00062 K10839 - gmx:100804038 598.201