Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g02028 ATGGTGAGAGACGATCTATGCATCACTGTTCCAAGCTTCTTTAGGTGTCCCATATCGCTTGACGTCATGAAATCCCCTGTCAGTCTCTGCACAGGTGTTACCTACGATCGTTCCAGCATCCAACGCTGGCTAGACAACGGCCACAACACCTGCCCCGCAACCATGCAGGTACTCCACACCAAGGAATTCGTTCCCAACCGTACTCTACAGAGACTTATTCAGATCTGGACCGACTCGGCTCGCCAACGAGTTGAATCGGCCGAGTCCCCACCTTCCAACTCTGTCACTTCCAAAGAACAAGTCCTATATGTTATCAGAGATATGCAGACTCAGAGCCAGAGTCAAAACCGATTGGATTCGTTAACTAAAATTGTATGTTTCGCCCAAGAATCCAAGGAGAACAGAGAAATTCTTGCTAACATGGACGGCCTTGTTCCTATGCTGGTTGGTTTCCTGGACAATGTCGATGATGCTGTTAGTGAGAGCGTTGAATTTCTCGAGAAAATTGTTGAGGCTCTGGATTTGGTTTTAGATAAAAGCAAAGAGCAGCGCGAGCAATTAGCAAAGCTGGTGTTGAAGAAGCAGAGCAATTGCTTAGCTTCTCTGGTTCTTGTACTACAAAAAGGCAGCAGCTCGGAGTCTAGAATTGGATCAGCCAGGATATTGGAAGCGATGGCCGTGGACGCGGAGGCGAAAGTGTTGATTGCCGAAAAGGAGGGGGTAGTACCGGAATTGCTTAAATTAATCACATTGACACCAGAGAAAGATGGAGGCGTAATCGAGAGCGGGTTGTCGTGCTTGGTGGCAATCTCGATGCCAAAACGGAACAAGATGAAATTGGTCAAATCTGGAGGTATACGGATACTGTCTCGATTGGTTTCAGAGACGAACCTAAGCGTTGGGGTGACGGAAAAAGTGCTGAAACTGCTAGAATCGGTGTCGTCGAGCAAGGAAGGGCGGGCGGAGATCTGCGAAGATGAAAGGTGCGTGGCGGGGATATTACACAAGGTTTTTAAAGTATCGAGTGTCGCGACGGAGCATGCGGTGACGATACTATGGAGTGTGTGCTATCTATTTCGTGACGAGAAAGCTCAGGAAACGGTGAGCAAGGCGAACGGATTAACCAAGATTCTACTTCTTATTCAGAGTAATTGTTCACCAGCTGTTCGACAAATGTCTGCAGATTTGCTAAAGATTTTTCGTGTAAACTCAAAATCATGTCTTCCTTACTATGATACTAACACCACGCATATCATGCCCTTTTGA 1266 0.4692 MVRDDLCITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGHNTCPATMQVLHTKEFVPNRTLQRLIQIWTDSARQRVESAESPPSNSVTSKEQVLYVIRDMQTQSQSQNRLDSLTKIVCFAQESKENREILANMDGLVPMLVGFLDNVDDAVSESVEFLEKIVEALDLVLDKSKEQREQLAKLVLKKQSNCLASLVLVLQKGSSSESRIGSARILEAMAVDAEAKVLIAEKEGVVPELLKLITLTPEKDGGVIESGLSCLVAISMPKRNKMKLVKSGGIRILSRLVSETNLSVGVTEKVLKLLESVSSSKEGRAEICEDERCVAGILHKVFKVSSVATEHAVTILWSVCYLFRDEKAQETVSKANGLTKILLLIQSNCSPAVRQMSADLLKIFRVNSKSCLPYYDTNTTHIMPF 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g02028 421 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Bach5g02028 421 SUPERFAMILY RING/U-box 6 78 - -
Bach5g02028 421 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Bach5g02028 421 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Bach5g02028 421 Pfam U-box domain 10 80 IPR003613 GO:0004842|GO:0016567
Bach5g02028 421 SUPERFAMILY ARM repeat 188 412 IPR016024 -
Bach5g02028 421 CDD RING-Ubox_PUB 11 63 IPR045210 -
Bach5g02028 421 Coils Coil 163 183 - -
Bach5g02028 421 Gene3D - 92 408 IPR011989 -
Bach5g02028 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 90 IPR013083 -
Bach5g02028 421 PANTHER WDSAM1 PROTEIN 9 409 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g02028 Bach-Chr5 29379459 29380724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g02028 1 421 U-box Gene Family AT5G64660 51.748 1.03e-141 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g02028 - - qsa:O6P43_023349 565.459