LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach5g02000	ATGGGATCCCTTTTTTCCTCCCCGCACTCAAATTCACCCCCTCGCAGAAACTCTGAGGGGTTAAAGAAAGAAAATGGGCATGTCAATAGAAATAGTAGAGGCAGTGGACCAGTCAGCCATAAAAAGTCGATAACAAGTTCCCATAAGCAGCTTCAGAGTGGTTATAAGATATCGAGTACTACTACTGTGAAAGCAAATGCTGGTGGTGGTGCTCTAGGAGCAAGAGGAGGAGAATTAGAAGCGGAAAAGAACCAGGTTGGGAATATTTCAAAGAGATTTGTAGAGAAGAGGATTGGAAGAGATGAATTTGTGGACGGATGGCCAAAGTGGCTGGTTGATAATATCCCTGCTAAGGTTTTGGCCGGTCTGGTTCCCAAGAGCGCTGATTCCTATGAAAAACTCGCCAAGGTAGGACGTGGAACATACAGCAATGTATACAAAGCTCGAGATAAGGAGAGTGGAAAAATTGTTGCTTTGAAGAAGGTACGGTTTGACACATCAGATTCTGAAAGCATCAAGTTTATGGCAAGAGAGATCATGATACTGCAGACGCTGGACCATCCCAATGTCATCAAGCTTGAAGGACTAGCAACATCAAGGATGCAATATAGTCTTTATCTAGTTTTTGATTTCATGCAGTCAGACCTAGCCAGAATTATCTCTTGCCCCGGCGAGAGACTCACTGAACCACAGATCAAGTGCTATATGCAGCAGCTGCTTGCTGGCCTCCAACATTGCCATGAGAGGGGAGTTATGCACCGTGATATTAAATCTTCCAACCTGTTAGTAGACAAACGAGGGGTGCTGAAAATTGGAGATTTTGGGCTTGCAAATTCTTTTGTTCTTAAACCCAAAGGTCCTCCTCTAACAAATCGAGTGGTGACACTCTGGTATAGAGCTCCTGAACTGCTTTTAGGTTCAACAGATTATGGATTTTCCATTGATCTCTGGAGTGCAGGATGCCTATTGGCTGAGATGTTTATTGGTAGGCCAATCATGCCTGGGAGGACAGAGGTTGAACAACTTCACATGATCTTCAAACTTTGTGGTTCTCCTTCGGATGATTACTGGAAAAAATTGAAGTTAATGACAAGCTATCGTCCACCACAACATTACAAACCAAATTATGAAGAAGCTTTCCAGCATTTTCCTTCCTCTTTCCTTGGTCTCCTGACCAAACTTCTTGATCTGGATCCTACCCATCGCGGCAGTGCTGCATCTGCTCTCAAAAGTGAATTCTTCAAAACTCCCCCATTAGCATGTGCCCTTTCAGCATTACCAGTAATCTCCAAAGATGAGGATGAGCAGTCACAAACTAAAAGACGCAAAAGGGCCAAGATGACAAGAAAAGACCAGAGATTTCAAACTAGTCGGGTGGGTTATGGGCAGAATCAAACTGCTGAAAAACTCAAAGGAGATTCTGAATTGTCCAAAGAAGAGAAGAGTATGGAACCTAACATGCTCAGCCAAGAAATGGGAAATAGTACAAGCAGCACATCATCGGGCTCAAAACTATCTATTGGCGAAGTGAATATCAAGGCATCTGTTTCTCCAGTTGTTGTGTCTGGTCCCAAAACAGAGGGTCATCCTGATGCTCTTAAGAACATAAAGAACTATGCCCTCTTACAAGCCTCTATAATAGATATTATAAATCGTAAGGAAGGCAATGAATTTGCTCAAGTTCGCAGGTCCTTTTCTGCATTGGATTTTCGTCTTGATCCAGAAACGTTATCAAATTTCTATGGAGTGGACAAAAAATTGGTCCATCAAATTTGA	1776	0.4279	MGSLFSSPHSNSPPRRNSEGLKKENGHVNRNSRGSGPVSHKKSITSSHKQLQSGYKISSTTTVKANAGGGALGARGGELEAEKNQVGNISKRFVEKRIGRDEFVDGWPKWLVDNIPAKVLAGLVPKSADSYEKLAKVGRGTYSNVYKARDKESGKIVALKKVRFDTSDSESIKFMAREIMILQTLDHPNVIKLEGLATSRMQYSLYLVFDFMQSDLARIISCPGERLTEPQIKCYMQQLLAGLQHCHERGVMHRDIKSSNLLVDKRGVLKIGDFGLANSFVLKPKGPPLTNRVVTLWYRAPELLLGSTDYGFSIDLWSAGCLLAEMFIGRPIMPGRTEVEQLHMIFKLCGSPSDDYWKKLKLMTSYRPPQHYKPNYEEAFQHFPSSFLGLLTKLLDLDPTHRGSAASALKSEFFKTPPLACALSALPVISKDEDEQSQTKRRKRAKMTRKDQRFQTSRVGYGQNQTAEKLKGDSELSKEEKSMEPNMLSQEMGNSTSSTSSGSKLSIGEVNIKASVSPVVVSGPKTEGHPDALKNIKNYALLQASIIDIINRKEGNEFAQVRRSFSALDFRLDPETLSNFYGVDKKLVHQI	591

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach5g02000	591	MobiDBLite	consensus disorder prediction	1	15	-	-
	Bach5g02000	591	SMART	serkin_6	131	414	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bach5g02000	591	FunFam	probable serine/threonine-protein kinase At1g54610	118	213	-	-
	Bach5g02000	591	MobiDBLite	consensus disorder prediction	487	504	-	-
	Bach5g02000	591	Gene3D	Phosphorylase Kinase; domain 1	121	213	-	-
	Bach5g02000	591	ProSiteProfiles	Protein kinase domain profile.	131	414	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bach5g02000	591	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	251	263	IPR008271	GO:0004672\|GO:0006468
	Bach5g02000	591	MobiDBLite	consensus disorder prediction	30	57	-	-
	Bach5g02000	591	ProSitePatterns	Protein kinases ATP-binding region signature.	137	160	IPR017441	GO:0005524
	Bach5g02000	591	PANTHER	CELL DIVISION PROTEIN KINASE	129	419	-	-
	Bach5g02000	591	MobiDBLite	consensus disorder prediction	454	470	-	-
	Bach5g02000	591	MobiDBLite	consensus disorder prediction	1	57	-	-
	Bach5g02000	591	Pfam	Protein kinase domain	131	414	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bach5g02000	591	MobiDBLite	consensus disorder prediction	471	485	-	-
	Bach5g02000	591	MobiDBLite	consensus disorder prediction	431	504	-	-
	Bach5g02000	591	Gene3D	Transferase(Phosphotransferase) domain 1	214	455	-	-
	Bach5g02000	591	FunFam	Putative serine/threonine-protein kinase	214	452	-	-
	Bach5g02000	591	SUPERFAMILY	Protein kinase-like (PK-like)	126	418	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach5g02000	Bach-Chr5	28984814	28988708	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach5g02000	126	444	Core Cell Cycle Gene Families	AT5G10270	45.994	1.21e-95	300

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Bach5g02000		Pkinase	1.3e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach5g02000	K08819		-	gmx:102667260	675.241