Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g01938 ATGGGAAGGTCTCCATGCTGTGATGATAATGGTCTGAAGAAAGGCCCCTGGACCCCTGAAGAGGATCAGAAGCTTGTTGACTACATTCAGAAACATGGTCTTGGCAGCTGGAGGGCTCTCCCTAAATTGGCAGGGCTGAACAGATGTGGGAAAAGTTGCAGGTTAAGATGGACCAACTACTTAAGGCCTGACATCAAGAGAGGCAAATTTTCCCAAGAAGAAGAACAAACAATTCTCAATCTCCATGCTATCCTGGGCAACAAGTGGTCAGCAATTGCTACTCACCTACCTGGTCGGACAGATAATGAAATCAAGAATTTCTGGAACACCCATCTCAAGAAGAAGCTGATTCAAATGGGTTATGATCCAATGACCCATCAGCCTCGAACTGATATATTCTCAAGCCTACCTCAACTTATTGCTCTGGCCAATCTCAAAGAATTTCTGGACCATCAGCCATGGGAACAAAGTGCTGCAGCTAGACTACAAGCTGAAGCCATTCAACTGTCCAGGCTTCAGTGCCTACAACATCTCCTACACCCTAATCCTGCAATAGAATCCTTCACAGACATGGATACCATTAATCTTTTGAACTCTCTGTCTTTGTTGAAGAACAATTCTGTTCAAGGCTATTCAGCTCAGTTGGAAAAAATCATTCCATCTCTTGGAGTTGAAGCCAGCAATGCCCAATTCGGAAATGACCTAAATATCCCTTTCTCTCACATGCCTGAATTGAAAACACCTTCCACCTATCAACCACTACAAAGCAATGATAAAGATACAGTTCAAGCACTTGACCCAGTGGCTTTCAGTCAGAGTGAAAGCTCTCCAAACTCTTCATGGGTTCTCTCGTGTTCAAGCACTCCGTCTCCTTCTCCCGTGGCTCTACCACCGGTGACTGAGACTTTAATAGCTAACATGACCGATAATTGTAGTGCTTCCAGTTATGGAGAAGTGGGTCCTTCTATTTGGCCTGAGTTGCTCCTTGACGACGCTCTGTTCCATGAGATTACCTAG 1017 0.4484 MGRSPCCDDNGLKKGPWTPEEDQKLVDYIQKHGLGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHAILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGYDPMTHQPRTDIFSSLPQLIALANLKEFLDHQPWEQSAAARLQAEAIQLSRLQCLQHLLHPNPAIESFTDMDTINLLNSLSLLKNNSVQGYSAQLEKIIPSLGVEASNAQFGNDLNIPFSHMPELKTPSTYQPLQSNDKDTVQALDPVAFSQSESSPNSSWVLSCSSTPSPSPVALPPVTETLIANMTDNCSASSYGEVGPSIWPELLLDDALFHEIT 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g01938 338 CDD SANT 69 112 IPR001005 -
Bach5g01938 338 FunFam MYB-related transcription factor 13 66 - -
Bach5g01938 338 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bach5g01938 338 CDD SANT 16 61 IPR001005 -
Bach5g01938 338 FunFam Transcription factor MYB39 69 130 - -
Bach5g01938 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Bach5g01938 338 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Bach5g01938 338 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bach5g01938 338 Gene3D - 11 67 - -
Bach5g01938 338 Gene3D - 69 116 - -
Bach5g01938 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Bach5g01938 338 SMART sant 66 114 IPR001005 -
Bach5g01938 338 SMART sant 13 63 IPR001005 -
Bach5g01938 338 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 252 - -
Bach5g01938 338 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Bach5g01938 338 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g01938 Bach-Chr5 27999375 28000768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g01938 1 337 MYB Transcription Factor Family AT5G10280 52.101 7.38e-107 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bach5g01938 Myb_DNA-binding 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g01938 K09422 - jre:109001565 433.335