Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g01919 ATGAATAGAAACTATTGTCCCACCAATCTCCACCGGAGAACATACGCTTCCTGCAATTTCCGGGGCCCCGTCCGTAATTCTTATTATCATCGCCAAACAGAGCATCTCGACCGCCCGCCGGAACGTCATGCCCCTCTCCGCTACGCCAATTTCGTCGTTGAGCTTTGCTTTGATTCCCGTGGGTTCAGCAGGGAAGATGTGGAGTCCTTAATTGCAAAGTGCAAGCCCAAGGTGGAGGATTTTTGTTTTTACCCCAGTGATCATGTTGCCGCTGCCCTGCATTTTAGCCAGTGGGTCGACGCTCTCGACGCCATTGTCTGCTTATGGGAATTTCGCCTCAATGAAGTTCACAGTTTTACCCCGGAGCTCACGTCATATGTTCTCGTACCTTCCGACATGGACGAGCTACGGGACCGCCTCCGGTCCCTTTTTGCCAATCATGTTCAGAGCCTCATGGAAGGCAAGGAAGTAAAGAAGTGGCTCGAGAAACTTGAGCCAATCTCGAAAGAAATCAAGAACCTTTCGGGTTTGCTTGGGAAGCCCAAGCCAATTCGATGGTTGAACGAACACCGACAAAAGAAACAGGGGCTTGATGCTGAGAAGCAGCTGATTGAAAGGAGAGTGAAGGAGTTTCAGATTGCAATGAAGTGTATATTGCACTACGTTGAGGAGAATAACTGGGAGGATGCTGATGAGGATGTCTTTCCAGTATTAAAGCTTGATGGAGGCTTGGATTGGAAGCGGGTTCATAGTCTGATAAAAAGGGAGCGGCGCCGTCTAGAGCAGGGATTACCCATTTATGCTTACCGGCGGGATATTCTTGAAGCAGTTGATTTTCAACAGATAATGGTATTAATTGGAGAGACTGGTTCAGGGAAGAGCACACAACTGGTACAGTTTCTGGCTGATTCTGGCATTGGTACCGACAAGTCCATCATATGCACCCAGCCTCGCAAGATTGCTGCCAAATCTTTGGCACATAGGGTCCAGGAAGAAAGTAGTGCCTGTTATGAAGATAATTCAATCAATTATTGTTCAACATTTTCATCCTCTTGTGAATTTGATTCAAAAATAATATTCATGACCGACCACTGTCTCCTGCAGCACTACATGAGTGATAAGAATTTGGCTGGGATCTCATGCATCATAATTGATGAAGCTCATGAAAGGAGCCTAAATACAGATCTTCTACTGGCATTGATCAAGAGTTTACTCTGTAGAAGGGTTGAAATGAGGCTTATTGTTATGTCTGCCACAGCTGATGCAAAGCAGCTATCCGATTACTTTTATGGTTGTGGTATTTTTCATGTGGTTGGGAGAAACTTTCCAGTTGAGGTGAGATATGTTGCTTATGAATCTTCTGGACATTCTGGTTCTGCTGCTGTTGCTTCTTATGCTTACGATGTTGTGAGAATGGTAACCGAGGTTCACAAAACAGAGAAAGAGGGAACTATTCTTGCCTTTTTAACATCTCAGGCAGAAGTGGAATGGGCCTGTGAAAAGTTTGCAGCTCCCTCTGCAATTGCATTGCCCTTGCATGGCAAACTTTCTTCTGAAGAGCAATTCCGTGTTTTCCAGAATTGCCCCGGGAAAAGAAAAGTCATATTTGCAACTAATCTTGCAGAGACCTCATTGACTATTCCTGGTGTTAAGTATGTGATAGATTCTGGATTGGTTAAAGATAGTAGATTTGAACCTGGCAGCGGTATAAATGTTCTTAAAGTTTGCTGGACCAGCCAGAGCTCTGCTAATCAACGGGCTGGTCGTGCTGGGAGGACTGAGCCTGGTAGGTGCTATAGACTCTACTCTGAATCTGATTATGAGTCTATGGCACCTAATCAAGAGCCCGAGATTCGACGAGTTCATCTTGGTATAGCAGTTTTGAGGATCCTAGCTTTGGGAATAAAGAATGTACGGGATTTTGAGTTTGTAGATGCTCCCAGTCCCAGTGCTATTGACATGGCAATCAGGAATCTAATTCAATTGGGAGCTATTAGACTAAACAATTCTGTTCATGAATTAACTGATGAAGGTCGGTGCCTGATCAGAATGGGGATTGAGCCAAGGATTGGTAAACTTATTCTTGGCTGTCTCAATTTAAATTTGGGTAAAGAAGGCCTTGTCCTTGCTGCTGTGATGGCCAATGCCAGCAGCATATTTTGCAGAGTTGGTAGTGATGATGAAAAACAAAGATCTGATTGTCTCAAGGTGCAATTTTGCCATAGCAATGGTGACCTTTTTTCTCTTCTCTCTGTATACAAGGAATGGGAAGCATTGCCTTTAGGGCGGAAGAACAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCCATGAGGAGATGCCAAGACACAATTATGGAACTGGAACTTTGCCTTCAGAATGAACTTAATTATATTATTCCAAGTTACTGGCGCTGGGACCCTTATAAGTTCACTGATCATGAGAAATCTTTGAAAAGGGCTATACTGTCCTCACTTGCTGAAAATATTGCCATGCACTCTGGATGTGACCAACTTGGTTATCAAGTAGCATCAAATGGGCAACATGTTCAACTGCATCCATCTTGTTCATTGCTGGTATTTGCTCAGAAACCATGTTGGGTTGTTTTTGGTGAGCTCCTTTCAGTTTCCAACCAATATTTGGTCTGTGTTAGTGCCTTTGACTTTGATTCGTTGTGCTCCCTTTTCCCTCCTCCCTTGTATGATGTTTCTGAGATGGAAAGAAAGAAGTTGCAAATGAGGACGTTGAATGGTTTTGGCAGTACACTGCTCAAGAGGTTTTGTGGGAAAGCCAATAGTAATCTGCTTGGTCTTCTATCACGCATACGAACAGCTTGTAAGGATGAACGCACCTTCATTGAAGTCAAAGTTGACCACAATGAGATTCAATTGTATGCTGCATCACAAGACATTGAATTGGCCCTTGAGTTGGTTAATGATGCTTTAAAATATGAGAAAAAATGGTTGCATACTGAATGCATGGAGAAATGCCTGTATCATGGTTCTGGTGTCTCACCTTCAGTAGCTTTGTTTGGATCGGGTGCTGAGATAAAGCATTTAGAACTCAATAAGCGTTGCTTGAGTGTGGATATATGTCATCCAAATATAAATGCTGTTGATGATAAGGAGCTATTGATGTTTCTCGAGAAGAATACCTCAGGTAGTATCTGTTCTGTGCACAAGTTCACTGGCATAGTACAGGATGTTGAAGATCGGGAAAAGTGGGGCAGAGTAATGTTTCTCTCCCCCGATGCTGCTAAAAGAGCTGTTGAGCTAGATGGTGAGGATTTTTATGGCACCTTGAAAATAGTTCCTTCACAGACAACTAACGGAGGGGATAAGTCATTCTCATTTCCTGCTGTTAAAGCGAAAATTTATTGGCCACGTAGGCCCAGCAAAGGATTTTGCATAGTAAAATGTGACAAACAGGATGTTGATTTCATCTTGAGAGATTTTTATAACCTTGCAATAGGAGGAAGACTTGTTAGATGTGAACCTAGCAGAAGGTATCCTGATAGCGTTGTAATCAGTGGGCTCGATAAAGAACACTCTGAAGGTGAAATTTTAGATGCTCTGAGAACTCATACAAATAGGAGGATTGTGGATGTTTTCTTGGTGAGAGGAGAAGCTGTTGGGAATCCGCCGTGTGGTACTTGTGAAGAGGCACTCCTAAAAGAAATTTCTCCTTTTATGCCAAAAACAAATCCCCGCATTAATTCTTGCAGAGTTCAGGTATTCTCACCTGAGCCAAAGCATGCTTTCATGAGAGCTTTGATCACCTTTGATGGAAGACTACATTTGGAGGCAGCAAAGGCTTTGGAACAAATTGAAGGGAAGGTGTTGTCTGGATGCTTGCCGTGGCAAAAGATAAAGTGTCAGCAGTTGTTTCATAGCTCCTTGACAATCCCAATTCCTGTGTATCGTGTGATCAAGGAACAACTGGATAAAATTTTTGCAAGCTTCAGCTCTATTAATGGTCTTGAGTGGAACCTAGAAAAGACGGTTAGTGGTTCCCATCGAGTGAAGATATCAGCCAATGCAACAAGGACAGTGGCAGAAGTTAGGAGACCTCTGGAAGAACTCATAAGAGGGAAAACTATTGACCATAACAGCCTCATTCCTACAGTTCTGCAGCTCCTTATGTCCAGAGATGGCATTAGTCTTAAAGCCTCAATACAGCAGGAGACAGGAACTTACATTCTTTTTGACAGGCCCAACCTGAAGTTACGGGTGTTTGGTTCTCCAGAAAAAGTTTCTGTGGCCGAGCAGAAGCTGATTCAATCCCTACTCTCTCTCTACGAGAGCAAGCAGCTAGAAATCCATCTTCGAGGGAGAGACCTACCTTTTGACCTAATGAAGCAAGTGGTCAAGAACTTTGGGCCTGATCTTCGAGGGCTAAAAGAGGAGGTACCTGAGGCAGACTTTACTCTCAACACACGTCGCCAGATAATCTCTTTTCATGGTAACAGGGAGTTGAAACCGAAAGTAGAGGAAATAATTTATAAGATTGCCCGATCAGGACAATGTTTGACTGAGAAACTTAGGACTGGATCAGATTGCCCAATTTGCTTGTGTGAGATTGAGGATGGATATCAGCTTGAAGGCTGTGGTCATTTGTTCTGCCGGTTGTGTTTGGTGGAGCAATATGAATCTGCTATAAGAAATCAAGGTAGTTTCCCAGTGTGTTGTGCTCATGAGGGCTGTGGGGATCCCCTTCTGCTTACAGATTTGAGATCGCTTCTGTCAAATGACAAATTGGATGAACTTTTCAGAGCTTCTTTGGGAGCATTTGTAACATCTAGTGGGGGCACTTACAGGTTTTGCCCGTCATCTGACTGCCCTTCAATTTATCGAGTTGCAGATCCTGGGACAGGTTGTGAGCCATTTGTTTGCGGAGCATGTTACGCAGAGACCTGTACCAGGTGCCACTTAGAGTATCATCCTTATCTTTCATGTGAAAGATACCGGGAGTTCAAAGAAGATCCAGACTCATCTTTGAAGGAGTGGAGCAAAGGGAAAGAGCATGTTAAGAGCTGTCCTGCATGTGGGTATACAATTGAGAAGGTAGATGGGTGCAACCACATTGAGTGCAAGTGTGGGAAGCATGTATGTTGGGTTTGCTTGGTGTTCTTTGGAACTAGTGATGAATGCTATAATCATTTAAGAAATATACACATGGCCATTATATAA 5190 0.4345 MNRNYCPTNLHRRTYASCNFRGPVRNSYYHRQTEHLDRPPERHAPLRYANFVVELCFDSRGFSREDVESLIAKCKPKVEDFCFYPSDHVAAALHFSQWVDALDAIVCLWEFRLNEVHSFTPELTSYVLVPSDMDELRDRLRSLFANHVQSLMEGKEVKKWLEKLEPISKEIKNLSGLLGKPKPIRWLNEHRQKKQGLDAEKQLIERRVKEFQIAMKCILHYVEENNWEDADEDVFPVLKLDGGLDWKRVHSLIKRERRRLEQGLPIYAYRRDILEAVDFQQIMVLIGETGSGKSTQLVQFLADSGIGTDKSIICTQPRKIAAKSLAHRVQEESSACYEDNSINYCSTFSSSCEFDSKIIFMTDHCLLQHYMSDKNLAGISCIIIDEAHERSLNTDLLLALIKSLLCRRVEMRLIVMSATADAKQLSDYFYGCGIFHVVGRNFPVEVRYVAYESSGHSGSAAVASYAYDVVRMVTEVHKTEKEGTILAFLTSQAEVEWACEKFAAPSAIALPLHGKLSSEEQFRVFQNCPGKRKVIFATNLAETSLTIPGVKYVIDSGLVKDSRFEPGSGINVLKVCWTSQSSANQRAGRAGRTEPGRCYRLYSESDYESMAPNQEPEIRRVHLGIAVLRILALGIKNVRDFEFVDAPSPSAIDMAIRNLIQLGAIRLNNSVHELTDEGRCLIRMGIEPRIGKLILGCLNLNLGKEGLVLAAVMANASSIFCRVGSDDEKQRSDCLKVQFCHSNGDLFSLLSVYKEWEALPLGRKNKWCWENSINAKSMRRCQDTIMELELCLQNELNYIIPSYWRWDPYKFTDHEKSLKRAILSSLAENIAMHSGCDQLGYQVASNGQHVQLHPSCSLLVFAQKPCWVVFGELLSVSNQYLVCVSAFDFDSLCSLFPPPLYDVSEMERKKLQMRTLNGFGSTLLKRFCGKANSNLLGLLSRIRTACKDERTFIEVKVDHNEIQLYAASQDIELALELVNDALKYEKKWLHTECMEKCLYHGSGVSPSVALFGSGAEIKHLELNKRCLSVDICHPNINAVDDKELLMFLEKNTSGSICSVHKFTGIVQDVEDREKWGRVMFLSPDAAKRAVELDGEDFYGTLKIVPSQTTNGGDKSFSFPAVKAKIYWPRRPSKGFCIVKCDKQDVDFILRDFYNLAIGGRLVRCEPSRRYPDSVVISGLDKEHSEGEILDALRTHTNRRIVDVFLVRGEAVGNPPCGTCEEALLKEISPFMPKTNPRINSCRVQVFSPEPKHAFMRALITFDGRLHLEAAKALEQIEGKVLSGCLPWQKIKCQQLFHSSLTIPIPVYRVIKEQLDKIFASFSSINGLEWNLEKTVSGSHRVKISANATRTVAEVRRPLEELIRGKTIDHNSLIPTVLQLLMSRDGISLKASIQQETGTYILFDRPNLKLRVFGSPEKVSVAEQKLIQSLLSLYESKQLEIHLRGRDLPFDLMKQVVKNFGPDLRGLKEEVPEADFTLNTRRQIISFHGNRELKPKVEEIIYKIARSGQCLTEKLRTGSDCPICLCEIEDGYQLEGCGHLFCRLCLVEQYESAIRNQGSFPVCCAHEGCGDPLLLTDLRSLLSNDKLDELFRASLGAFVTSSGGTYRFCPSSDCPSIYRVADPGTGCEPFVCGACYAETCTRCHLEYHPYLSCERYREFKEDPDSSLKEWSKGKEHVKSCPACGYTIEKVDGCNHIECKCGKHVCWVCLVFFGTSDECYNHLRNIHMAII 1729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g01919 1729 Pfam Helicase associated domain (HA2) 655 745 IPR007502 GO:0004386
Bach5g01919 1729 CDD DEXHc_RHA-like 281 437 - -
Bach5g01919 1729 SMART ultradead3 262 447 IPR014001 -
Bach5g01919 1729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 772 IPR027417 -
Bach5g01919 1729 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1515 1597 - -
Bach5g01919 1729 CDD BRcat_RBR 1604 1655 - -
Bach5g01919 1729 Gene3D - 1648 1727 - -
Bach5g01919 1729 SMART ibrneu5 1587 1652 IPR002867 GO:0008270
Bach5g01919 1729 SMART ibrneu5 1653 1717 IPR002867 GO:0008270
Bach5g01919 1729 SUPERFAMILY RING/U-box 1519 1592 - -
Bach5g01919 1729 SMART helicmild6 496 594 IPR001650 -
Bach5g01919 1729 CDD Rcat_RBR_DEAH12-like 1676 1725 - -
Bach5g01919 1729 CDD SF2_C_RHA 442 602 - -
Bach5g01919 1729 Pfam Helicase conserved C-terminal domain 475 593 IPR001650 -
Bach5g01919 1729 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 818 896 IPR011709 -
Bach5g01919 1729 ProSiteProfiles TRIAD supradomain profile. 1516 1724 IPR044066 -
Bach5g01919 1729 ProSitePatterns Zinc finger RING-type signature. 1536 1545 IPR017907 -
Bach5g01919 1729 Pfam Zinc finger, C3HC4 type (RING finger) 1520 1562 IPR018957 GO:0046872
Bach5g01919 1729 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1648 1726 - -
Bach5g01919 1729 ProSiteProfiles Zinc finger RING-type profile. 1520 1562 IPR001841 -
Bach5g01919 1729 Gene3D - 639 742 - -
Bach5g01919 1729 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 274 438 IPR014001 -
Bach5g01919 1729 Pfam IBR domain, a half RING-finger domain 1596 1652 IPR002867 GO:0008270
Bach5g01919 1729 SUPERFAMILY RING/U-box 1603 1657 - -
Bach5g01919 1729 FunFam RBR-type E3 ubiquitin transferase 637 743 - -
Bach5g01919 1729 Gene3D - 441 614 IPR027417 -
Bach5g01919 1729 Gene3D - 246 440 IPR027417 -
Bach5g01919 1729 PANTHER ATP-DEPENDENT RNA HELICASE 226 892 - -
Bach5g01919 1729 SMART ha2_5 654 750 IPR007502 GO:0004386
Bach5g01919 1729 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 441 613 - -
Bach5g01919 1729 Pfam DEAD/DEAH box helicase 281 425 IPR011545 GO:0003676|GO:0005524
Bach5g01919 1729 Coils Coil 187 207 - -
Bach5g01919 1729 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 468 634 IPR001650 -
Bach5g01919 1729 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 380 389 IPR002464 -
Bach5g01919 1729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1516 1596 IPR013083 -
Bach5g01919 1729 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 247 440 - -
Bach5g01919 1729 SUPERFAMILY RING/U-box 1674 1721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g01919 Bach-Chr5 27696628 27703098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g01919 1536 1707 ARIADNE family AT3G27710 28.902 1.18e-13 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g01919 K12818 - gmx:100810008 2546.93