Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g01723 ATGTTCTTCATTGATGCCATGGCGGGAGCTCAGATCTCTGAAACCAGGAATGTGGAGGCAAAGCTATTGCAGAGGTTAAGCAACTCATCAATGGAGGCAAGGGCTAGAGAAGCTGAAAAACTGAATGAACAAGCAGTGGCAGACCCAGAGGAAGTTGTTTCCATGGTTGAGATGAGCATTAGGAACAGCACAGAAAGGAGAAAGTTGGGGTTTTTCTCCTGTGGAACAGGTAATCCAATTGATGATTGCTGGCGTTGTGACCCGAACTGGCAAAAGAACAGGAAGCGTCTTGCAGATTGTGGTATTGGATTTGGCAGAAACGCCATTGGTGGCCGTGATGGTAGATTCTATGTTGTGACTGATCATAGAGACGATGATCCAGTTAACCCCAAGCCTGGCACTCTTCGCCATGCTGTAATCCAAGATAGGCCTCTCTGGATTGTGTTCAAGCGTGACATGGTTATCCAATTAAAGCAAGAGCTCATGGTGAATAGCTTCAAGACCATTGATGGGCGAGGAGCCAATGTTCACATTGCCAATGGAGGATGCATCACTATCCAATTTGTGACCAATGTCATCATTCACGGTCTTCACATCCATGACTGCAAACCCACTGGCAATGCAATGGTGAGGAGCTCACCTACACACTATGGATGGAGAACAATGGCTGATGGGGACGCCATCTCCATATTTGGCTCAAGTCATATCTGGGTCGACCATAATTCTTTGTCCCACTGTGCTGATGGCCTTGTGGATGCTGTCATGGGCTCAACAGCTATTACAATTTCCAATAACCACCTCACCCACCACAACGAGGTGATTCTGCTGGGTCACAGTGATTCTTACACAAGAGACAAGCAAATGCAAGTGACAATTGCATACAACCATTTTGGAGAGGGACTTATTCAGAGAATGCCAAGGTGTAGGCATGGATATTTCCACGTTGTGAACAATGACTACACTCACTGGGAGATGTATGCAATTGGTGGAAGTGCAAACCCCACCATCAACAGCCAGGGTAATAGATACAATGCACCAGCTAACTCATTTGCCAAGGAGGTGACTAAGAGAGTAGAGACAGCTGAAAGTGAGTGGAAGGGTTGGAATTGGAGATCAGAGGGAGATCTGTTGCTGAATGGTGCCTATTTCACCCCATCTGGTGCTGGAGCTTCCGCTAGCTACGCCAGGGCCTCAAGCTTAGGAGCTAAGTCTTCTTCCATGGTTGGTAGCATGACTGCTAATGCTGGTGCAATCGGTTGCCGCAGAGGCCGTCAATGCTAG 1281 0.4754 MFFIDAMAGAQISETRNVEAKLLQRLSNSSMEARAREAEKLNEQAVADPEEVVSMVEMSIRNSTERRKLGFFSCGTGNPIDDCWRCDPNWQKNRKRLADCGIGFGRNAIGGRDGRFYVVTDHRDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELMVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPTHYGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPANSFAKEVTKRVETAESEWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSMTANAGAIGCRRGRQC 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g01723 426 PRINTS Pollen allergen Amb family signature 160 176 IPR018082 -
Bach5g01723 426 PRINTS Pollen allergen Amb family signature 368 392 IPR018082 -
Bach5g01723 426 PRINTS Pollen allergen Amb family signature 100 117 IPR018082 -
Bach5g01723 426 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Bach5g01723 426 PRINTS Pollen allergen Amb family signature 397 420 IPR018082 -
Bach5g01723 426 PRINTS Pollen allergen Amb family signature 224 245 IPR018082 -
Bach5g01723 426 PRINTS Pollen allergen Amb family signature 124 149 IPR018082 -
Bach5g01723 426 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Bach5g01723 426 Gene3D - 77 419 IPR012334 -
Bach5g01723 426 FunFam Pectate lyase 77 419 - -
Bach5g01723 426 SMART amb_all 152 349 IPR002022 -
Bach5g01723 426 Pfam Pectate lyase 158 341 IPR002022 -
Bach5g01723 426 SUPERFAMILY Pectin lyase-like 53 420 IPR011050 -
Bach5g01723 426 PANTHER PECTATE LYASE 18-RELATED 41 424 IPR045032 GO:0030570
Bach5g01723 426 Coils Coil 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g01723 Bach-Chr5 17601484 17605692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g01723 10 426 Polysaccharide Lyase AT4G13710 79.196 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g01723 K01728 - gmx:100808253 796.193