Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g01564 CCTTGTTCCCAATCCAAAACCCATAACCTACCCAAAATCTCTGCTTCAATTTGCTGCCGAAATCCAGCTTTGGAGGGAGGAAGGTAGAGAGGGGTCGCAGAGGAGGAGGTGAGAGGGCGAGAAGGCGACATGGATTCGGATCAAGGTAAGCTTTTCATTGGTGGGATTTCGTGGGATACATCGGAGGATAAGCTGAAGGAGCACTTCAATAACTACGGTGATGTCTTGCACACTTCCGTTATGAGGGAGAAGAACACTGGGAAGCCCAGAGGTTTTGGGTTCGTGGTGTTTGCAGATCCTTCGATTCTCGATAGGGTTCTCGAGGAAAAGCACGTAATTGATGGAAGAACGGTAGATGCTAAGAGGGCCTTTTCTAGGGAGGACCAGCAAATTTCTGCTTCTTCCAGAGCTGGAAATCCTAATTCTGCCAGGAATGCTGGAAATGGTGGAAATATAAGGACGAAAAAAATATTTGTTGGAGGATTACCTGCTACCTTGACGGAGGAAAAATTTCGTCAATATTTTGAAGCTTATGGCCATGTAACTGATGTAGTAGTCATGTATGACCAGAATACGGGACGACCTCGAGGATTTGGGTTTATTTCCTTTGACACTGAAGAAGCAGTTGACAGGGTTTTGCATAAGCCATTTCATGATTTAAATGGCAAGCAAGTAGAAGTGAAGCGTGCACTTCCCAAGGATGCCAATCCTGGTGCAAGTGGTCGTACAATGGGTGGAGGTGGTGGTGCTGGACTTGGTGGCTATCAGGGGTATGGGGTGTCTGGTGGCAACCAAAATGCTTATGATGGTCGGATAGATTCTGGTAGGTATATGCAACCTCAAAGCACTGGGGGTGGTTTTCCACCTTATGGCTCTTCTGGTTATAGTGCTCCTGGCTATGGGTATGGTCCAGCTAATAGTGGCATGGGTTATGGTGGATATGGAAGTTATGGTGGTGCCAGTGCAGGGTATGGTGGACATGGTGCAACCTATGGGAACCCAAATGTCCCTAATGCTGCTTATGCTGGTGCTCCACCAGGTGCTCCGAGGAGTTCATGGACTGCTCAAGCTCCCTCTGGTTATGGTTCTATGGGTTATGGAAATACTGCACCTTGGGGTGCTCCAAGTGGTGGTGCTGGCTCTGGTGCTGGTGGCCCTGGTTCAGCTCCTGCAGGTCAATCACCAAGTGGAGCTGCTGGATATGGAAATCAAGGATATGGATATGGTGGGTATGGTGGATATGGAGGAAACGATAGTTCTTATGGGAACCCAGGTGTATATGGTGCTGTTGGTGGGCGTTCTGGGAGTGCCCCAAATAGTAATGCCAGTGGTTCAGGTGGGAGTGAGCTACAAGGGAGTGGTGGCAGTTATATGGGAAGTGGCTATGGTGATGCAAATGGAAATTCAGGATATGGAAATGCAGCATGGAGATCTGAACAAACACAGGCATCTGGAAATTATGGGACACCTCAAGGAAATGGTTCACATGGTGGGCAAGTTGGTTATGGTAGTGGTTATGGTGGTCAGGCCCGGCAAGCCCAGCAGCAGTAA 1551 0.4861 MDSDQGKLFIGGISWDTSEDKLKEHFNNYGDVLHTSVMREKNTGKPRGFGFVVFADPSILDRVLEEKHVIDGRTVDAKRAFSREDQQISASSRAGNPNSARNAGNGGNIRTKKIFVGGLPATLTEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFISFDTEEAVDRVLHKPFHDLNGKQVEVKRALPKDANPGASGRTMGGGGGAGLGGYQGYGVSGGNQNAYDGRIDSGRYMQPQSTGGGFPPYGSSGYSAPGYGYGPANSGMGYGGYGSYGGASAGYGGHGATYGNPNVPNAAYAGAPPGAPRSSWTAQAPSGYGSMGYGNTAPWGAPSGGAGSGAGGPGSAPAGQSPSGAAGYGNQGYGYGGYGGYGGNDSSYGNPGVYGAVGGRSGSAPNSNASGSGGSELQGSGGSYMGSGYGDANGNSGYGNAAWRSEQTQASGNYGTPQGNGSHGGQVGYGSGYGGQARQAQQQ 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g01564 473 CDD RRM2_Hrp1p 113 190 - -
Bach5g01564 473 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bach5g01564 473 SMART rrm1_1 113 185 IPR000504 GO:0003723
Bach5g01564 473 MobiDBLite consensus disorder prediction 391 412 - -
Bach5g01564 473 MobiDBLite consensus disorder prediction 81 107 - -
Bach5g01564 473 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Bach5g01564 473 MobiDBLite consensus disorder prediction 419 455 - -
Bach5g01564 473 Gene3D - 4 85 IPR012677 -
Bach5g01564 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 73 IPR000504 GO:0003723
Bach5g01564 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Bach5g01564 473 Gene3D - 86 208 IPR012677 -
Bach5g01564 473 SUPERFAMILY RNA-binding domain, RBD 111 219 IPR035979 GO:0003676
Bach5g01564 473 MobiDBLite consensus disorder prediction 379 473 - -
Bach5g01564 473 MobiDBLite consensus disorder prediction 84 106 - -
Bach5g01564 473 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 473 - -
Bach5g01564 473 MobiDBLite consensus disorder prediction 334 353 - -
Bach5g01564 473 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Bach5g01564 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Bach5g01564 473 FunFam heterogeneous nuclear ribonucleoprotein 1 107 228 - -
Bach5g01564 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g01564 Bach-Chr5 13511204 13513714 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g01564 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 22.115 1.23e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g01564 K14411 - gmx:100811267 574.318