Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bach5g01515 | TCCCACTTTCCCACTTCACTCTTCCTGCAAAATCTACGAAAATCCACTTAGCGTTTTTGACTTGACATTCATTTCATGGGGCAAAACCAATCCAAGGGCGAGCTTGTCTATCAGCAGGTCAATTATGGGAACGCCGAAGGAATCAAAGCCCTTTGCAGGGAAGGTGCAAGCCTTGAGTGGATTGATAGAGAAGGAAAGACACCCTTGATTGTTGCTTGCATGAATCCAGAGAGTTATGATGTTGCCAAAACTTTGATAGAACTTGGTGCTAATATTAATGCATATCGTCCGGGTCGTCATGCGGGGACTCCATTACATCATGCAGCCAAAAGAGGCCTTGAAAGCATTGTTAAATTACTTCTTATGCATGGAGCAAATCCCTTGGTCTTGAATGACGATTGCCAAACTGCTCTTGATGTTGCCAGGGCTAAAGGGCACACCAATGTTGTCCGTGCAATAGAGAATCATCTTTGCTTGTTCTCTGGTTGGCTGCGGGAGTTTCATGGACCAGGATTCCTTGAAGTAGTAGCTCCTCAGTTGGCATCTAGAAAAGTATGGGTGGTTGTTTTACCAGTTGGCTCCCGTTCTCTTGCCACACCTTACAAGTTGGAACTTTCCATATATTCTAGTTTGCAGGATGCAAAACCACGTGCGGTTATTGCTTTGTGGAAGGCCAACTTAGAAGAACCAAAGTTACACCAATCTGATCCTTCAGTGAATATTGTTGATAATTCTAGCAAAACACGCATTAAACTTGGACCTGCAAGCGAGAATGACAAGCAACAACTTATGTGGTTTTCTGATGCATGCAAAGGAATTCCACAAGCAAGACATCCAGCAGTTTTGCAAAACAACCTGACAACAGTTCCACCAACAGCACCACCAGCTGCAGAAGATCTAGAGATGGCTATGGCTATCAATGCGTCGATTCAGTCTGCCATGCAGGAGAGGCCACCTGTTCCCGATGCCCAGCCAAGTTTTGAAGGGAGTTCTTCAAGTGGCCAAACTTATACAGGTAAGTACGATTCACTTGGTCCAACAAAGCCAAATACAAATAGTAGCGAGTCTGTTCATGAAGCTGGCCCGAGTGGTAGTTCAAGTCAACATGTCCAGATTCATGACAATGTCCCAGCCCAAACTGCTAGTGGTGTGGATTCAATTCCATCAGCTCCTCCAATTGTAGATGAGATTTCAGAAGATCGTCCCATTCAGTATCCATCGATTGATTTAAGCCCTGTTGATATGTCGTCTCCAGCTGTCGAAAAGCTATCTAAAGAAGAAAAAAAGGATGTTACAAGTGGTTCATGTGTAATATGTCTAGATGCTCCGGCAGAGGGGGCGTGCATCCCCTGTGGCCATGTTGCTGGATGCATATCTTGCTTAAATGAAGTCAAAGCAAAGAAATGGGGTTGTCCTGTCTGTCGGGCAAAGATTAACCAGGTTATAAAGATATATCATGTTTAAGATTTTAGCCACAGAATCTTGAGTGAGAAGCTTGAAATCTGACTGCTTGTCTGGATCTTCTGCAGTTAAAATCACTGCATTATTTCCTGCAGTTGCCAACGTGCAGACACATGAATTGTTGGATGAATCGATCAATATCCATACGATTCAATCTAACAGCTCTCATATTGCCACATTAGCAACTGCAGGAAATGCAGGGATTTTTTTTTCTACAGATAATCCATGTATCAGCGGAAGGTATACATGGTTGAGTTGAAAAATGATTTAGGAATTGGTTTCAGTTAAAAATGACAGAGGAGAAAAAATACCCCCTTTGAGACTTAGTGAATATGTTGTAGGTATGTAAATTCGTGAGTTCATGTTTACAAATGTCTTATTCGTGAGAAAAATATCTAGAACATATTATTTCGTTGTGAACAGGAGGCTAAAAATAGGAAGTCAACTATCTGGATTTGACCTGTTCATTGTTGGTTTGTGATTTATATTCCTACTTGAGAAATGGATTGAACAATGGTCTCAGGATCTCTG | 1992 | 0.4217 | MGQNQSKGELVYQQVNYGNAEGIKALCREGASLEWIDREGKTPLIVACMNPESYDVAKTLIELGANINAYRPGRHAGTPLHHAAKRGLESIVKLLLMHGANPLVLNDDCQTALDVARAKGHTNVVRAIENHLCLFSGWLREFHGPGFLEVVAPQLASRKVWVVVLPVGSRSLATPYKLELSIYSSLQDAKPRAVIALWKANLEEPKLHQSDPSVNIVDNSSKTRIKLGPASENDKQQLMWFSDACKGIPQARHPAVLQNNLTTVPPTAPPAAEDLEMAMAINASIQSAMQERPPVPDAQPSFEGSSSSGQTYTGKYDSLGPTKPNTNSSESVHEAGPSGSSSQHVQIHDNVPAQTASGVDSIPSAPPIVDEISEDRPIQYPSIDLSPVDMSSPAVEKLSKEEKKDVTSGSCVICLDAPAEGACIPCGHVAGCISCLNEVKAKKWGCPVCRAKINQVIKIYHV | 462 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bach5g01515 | 462 | MobiDBLite | consensus disorder prediction | 288 | 345 | - | - | |
| Bach5g01515 | 462 | SUPERFAMILY | RING/U-box | 410 | 456 | - | - | |
| Bach5g01515 | 462 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 393 | 462 | IPR013083 | - | |
| Bach5g01515 | 462 | SUPERFAMILY | Ankyrin repeat | 13 | 133 | IPR036770 | - | |
| Bach5g01515 | 462 | Pfam | Ankyrin repeats (many copies) | 60 | 116 | IPR002110 | GO:0005515 | |
| Bach5g01515 | 462 | Gene3D | - | 3 | 149 | IPR036770 | - | |
| Bach5g01515 | 462 | PANTHER | ROLLING PEBBLES, ISOFORM B | 25 | 245 | - | - | |
| Bach5g01515 | 462 | SMART | ANK_2a | 39 | 69 | IPR002110 | GO:0005515 | |
| Bach5g01515 | 462 | SMART | ANK_2a | 75 | 104 | IPR002110 | GO:0005515 | |
| Bach5g01515 | 462 | SMART | ANK_2a | 108 | 137 | IPR002110 | GO:0005515 | |
| Bach5g01515 | 462 | ProSiteProfiles | Ankyrin repeat profile. | 75 | 107 | IPR002110 | GO:0005515 | |
| Bach5g01515 | 462 | ProSiteProfiles | Zinc finger RING-type profile. | 411 | 450 | IPR001841 | - | |
| Bach5g01515 | 462 | Pfam | Zinc finger, C3HC4 type (RING finger) | 409 | 456 | - | - | |
| Bach5g01515 | 462 | MobiDBLite | consensus disorder prediction | 300 | 345 | - | - | |
| Bach5g01515 | 462 | ProSiteProfiles | Ankyrin repeat profile. | 39 | 72 | IPR002110 | GO:0005515 | |
| Bach5g01515 | 462 | SMART | ring_2 | 411 | 449 | IPR001841 | - | |
| Bach5g01515 | 462 | CDD | RING-HC_XBAT35-like | 408 | 460 | - | - | |
| Bach5g01515 | 462 | ProSiteProfiles | Ankyrin repeat region circular profile. | 39 | 69 | - | - | |
| Bach5g01515 | 462 | ProSiteProfiles | Ankyrin repeat region circular profile. | 75 | 101 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bach5g01515 | Bach-Chr5 | 12611651 | 12616329 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bach5g01515 | 411 | 459 | C3H Transcription Factor Family | AT3G06140 | 34.694 | 2.68e-06 | 47.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bach5g01515 | - | - | gmx:100789309 | 688.723 |