Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g01405 ATGGCCGTCGGAAAGAACAAGAGGATTTCCAAGGGGAAGAAGGGTGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTACGATATTAAGGCCCCTTCTGTCTTCCAAGTCAAAAGTGTGGGCAAGACCCTTGTCACTCGTACTCAGGGAACCAAGATTGCCTCAGAAGGGCTTAAGCATAGAGTTTTTGAGGTCTCTCTGGCTGATCTTCAAGGTAATGACGAGGATCATGCATTCAGGAAGATTAGGTTAAGAGCTGAGGATGTTCAAGGGAAGAATGTCCTGACAAATTTCTGGGGAATGAATTTTACAACCGACAAATTGAGGTCATTGGTGCGAAAATGGCAAACTTTAATAGAAGCTCATGTGGATGTGAAGACCACTGATAACTACACATTGAGGTTGTTTTGCATTGGGTTTACTAAGAGACGTGCAAACCAGGTGAAGAGGACCTGTTATGCACAAACAAGCCAGATTAGACAGATCCGCAGGAAGATGAGGGAGATCATGACTAACCAGGCTACATCCTGTGATTTGAAAGAGTTGGTCCGCAAATTCATTCCTGAGATGATCGGAAAAGAGATTGAGAAAGCCACATCCAGCATTTACCCTCTACAAAATGTGTTCATTAGGAAAGTCAAGATCTTGAAAGCTCCCAAGTTTGATCTTGGAAAACTGATGGAGGTTCATGGTGATTATTCAGAAGATGTTGGTCAGAAGGTAGACAGACCTGCTGATGAAACAATTGCCGAGGAAACAACCGAAGTTGTCGGAGCTTGATCAAGTCATCATCATGCATTTATAGTTTTTTGTAGGGGTGCTGCTACTTTGTTTTCTTCACTGAAATTTAGTCTAAATTAAACTGCAGTTTAATGTTTTTTACCCAAGCTGGGTGAACCAATTTTACTGACTTTGACAAACACAATTTTGAGCTCTCAATCTATATATTCATTACCTTCAGACCCTCAAA 979 0.4208 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKSVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQGNDEDHAFRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFCIGFTKRRANQVKRTCYAQTSQIRQIRRKMREIMTNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGQKVDRPADETIAEETTEVVGA 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g01405 262 Hamap 40S ribosomal protein S1 [RPS3A]. 1 259 IPR027500 GO:0003735|GO:0005840|GO:0006412
Bach5g01405 262 MobiDBLite consensus disorder prediction 1 15 - -
Bach5g01405 262 MobiDBLite consensus disorder prediction 1 20 - -
Bach5g01405 262 Pfam Ribosomal S3Ae family 16 222 IPR001593 GO:0003735|GO:0005840|GO:0006412
Bach5g01405 262 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 253 - -
Bach5g01405 262 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
Bach5g01405 262 SMART Ribosomal_S3Ae_2 15 222 IPR001593 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g01405 Bach-Chr5 10803929 10806551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g01405 1 262 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 84.791 7.73e-161 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g01405 K02984 - gmx:100813273 461.07