LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach5g01262	ATGGACTGCAACAAAGAAGAGGCTGTAAAGGCCAAGAACATTGCCTTAATGAAGATGGAAAGCAAGGATTTCACAGGGGCTCGGAAATTAGCTCTTAAGGCGCAACAACTATATCCTGATCTGGAGAATATAGCTCAGATTCTTGTCGTGTGTGATGTGCATTGTTCAGCTGAGCAGAAATTGTTTGGTAATGAGATGGACTGGTATGGAATTCTTCAAATTGAGTGGACAGCCAATGAGGCAACAATTAAGAAGCAATACAGGAAGTTTGCTCTTCTGCTTCATCCTGACAAAAACAAGTTTGCTGGTGCTGAAGCTGCATTTAAGCTGATCGGGGAAGCTTCAAGGGTGCTGATGGACAGAGATAAACGGGCTATGCATGACATGAAGCGCAGAGCTTCTATGAATAAGCCTGCAATGTCATATCGTCCACCTCAGAAGGTTTATACAAACGTTAATGCTGGGATGCATAACAATTTCAGGAACAATTTTCCAAACTTGTATCCTCAGCATCCGCAGTCTTGGCAGCAAGGTCAGCCGGGGCCTAATAATGCACAGCCTCTGCATCAGCAGCAATCTGGTAATCAGGAGCCCAATGGAAAACGCACTACTTTTTGGACTGTGTGCCCAGTTTGTGCTGTTAAATATCAGTATTACACAGAAGTTATGAATAAATCTCTTCGTTGTCAAAATTGCACCATGTCCTTTGTTGCGTATAATCTAAATGTGCAAGGCATGTCACCAGCAACTAATGAGAACACTGATAATTCCAATAGAGAGCCTCTCAAGAAGAAAGGCCTGTCTTCTTATACTGTTTCTGGAAAGATGAATGGAAATAGGAGGAAGAAGACAGAATCCAGTGAAAGTTCTACAGGTAGCACTGATTCTGAAGAAGATACAGTTGCCAATGAGGATGAAATTTTCAGTGAACAAAACCATTCAACTTATAGAGAAGAGGATCCACGTAGATCTGCACGACAAAAGCGGAAGGTTTCTTACAAAGAGAACAGGAGTGATGATGAGGACAATGACTTAAGGCCTTCAAAAAGGGCCAAGGGGGCTGAATCACCACCTGTTACTGAAGAAGCTTGCGGAGAGGCAGCTAAAATGAATTATCAAAATGGTTCAGCTGATCTGAAAGTTGATGAAAAAGAGATGAAAGAGGAACACAATCTTCTTTCTGAAGAGAGCTTACCCAATAGCAATGAGGAAACCAAGGAGATGAGCCGAAAAGAAACAGTGGGAGGCACAAAGAAGTCAGTCGAAGCTTCTGAGGGTTATGCACCTGATCCAACCTTGAAAGCAACAGAAAATCCAATAATTCTTGAATGTCCTGATGCAGAGTTCAGTGACTTTGAGAAGCACAAGAAAGAAGAGTGTTTTGCTGCTGGGCAGACCTGGGCAATTTATGATACAGCAGAAGGCATGCCTAGATTCTATGCTGTGATAAAAAAAGTTCTCTCTCCTGAGTTCAAGCTGGAAATAACGTGGTTTGAACCAGATCCTGTTAATGAGGATGAAATTAAGTGGGTAGACGAGGAATTACCAGTTGCTTGTGGGAGGTTTTGCCTTGGAGCAACTGAAATCACAGAAGACCATCCCATGTTCTCACATTTGATTCATTTTGAAAAAACTGGCCGTGGTAAGAAAGCTCTTTATAAAGTGTATCCTAGAAAGGGAGAAACTTGGGCTCTCTTTAGAAATTGGGATATTAAATGGCACACTGATGCAGAATCTCATCGAAGTTATGAATTTGAGTTTGTTGAAATCTTGTCAGATTATGTTGAGGATAAGGGTGTATCTGTTGCATACTTGGCTAAGTTGAAAGGCTTTGTGAGTATTTTCTCTCGAATTGTAAAGGAAGGTAATCATTCGTTCCAAATTCCATCGCAGGAATTATTCAGATTCTCTCACAGGGTTCCATCTTTCAAAATGACTGGCCAGGAAAAAGTAGGTGTTCCAATAGGATCTTATGAACTTGATCCTGCATCTTTGCCTTTGAATATTGAAGAGATTGATGCTCCTGAAGATTTGGAAGTAAAGGTTAATCCATCTGGTGGTGTGAATATGAGTTCTCCAGATAGCTTGAAATCCATGCTGGCATCTGATAGAGACAAATCTAATGTCAGAAGAAGCAATTTGGTGAAAGAGAATGATGATGTTGGAGATCATGATACTCCTTCTGCTCCAAACCAAGAAGCTACTGAAATTCCAGATCCTCAGTTCTACCATTTTGATGCCGATAGGTCTGAGGAGAAGTTTCGGATTGGTCAGATTTGGGCATTTTATAGCGATGAGGATGCCTTGCCAAAATACTATGGTCAGATTAAGAAAATTGTGACTAGCCCAATTCTTAATTTGCATGTTTCTTGGCTTGCTTCCTGCAATTTACCTGAGAATGCTATTAGATGGGAAAAAGATGAAGAAATGCCAATATCTTGTGGCAGATTTAAAATTGACAAGAAACATTCCAATGTTTATGATAACATCTTCTCCATTTCACATCAAGTGCATGCTGATACTGATGGTAGGAATAATGTATTTGTTATCTTTCCTAGGAAAGGTGAAGTTTGGGCACTATATCGGAACTGGACAGCTGAAATGAAACGAGATGACTTGGTAAACTGGCAATATGATATAGTCGAAATTCATCAAGAAAGCCATTTGTGGATTGAAGTTTTAGTTTTGGAGATTGTTGGTGGTTTTAATTCAGTTTTTAGGCGCAAATTGAACGATGGATCAGCTATTACCTTGAGAATACCCAAGACAGAGTTACTTAGGTTCTCCCATCAAATTCCTGCATTCAAACTAACAGAGGAACATGGCAATCTGAGAGGCTTCTGGGAGCTTGATCCGCCAGCGCTCCCAATGCATTATTTTGGTTCCTCTTGA	2892	0.407	MDCNKEEAVKAKNIALMKMESKDFTGARKLALKAQQLYPDLENIAQILVVCDVHCSAEQKLFGNEMDWYGILQIEWTANEATIKKQYRKFALLLHPDKNKFAGAEAAFKLIGEASRVLMDRDKRAMHDMKRRASMNKPAMSYRPPQKVYTNVNAGMHNNFRNNFPNLYPQHPQSWQQGQPGPNNAQPLHQQQSGNQEPNGKRTTFWTVCPVCAVKYQYYTEVMNKSLRCQNCTMSFVAYNLNVQGMSPATNENTDNSNREPLKKKGLSSYTVSGKMNGNRRKKTESSESSTGSTDSEEDTVANEDEIFSEQNHSTYREEDPRRSARQKRKVSYKENRSDDEDNDLRPSKRAKGAESPPVTEEACGEAAKMNYQNGSADLKVDEKEMKEEHNLLSEESLPNSNEETKEMSRKETVGGTKKSVEASEGYAPDPTLKATENPIILECPDAEFSDFEKHKKEECFAAGQTWAIYDTAEGMPRFYAVIKKVLSPEFKLEITWFEPDPVNEDEIKWVDEELPVACGRFCLGATEITEDHPMFSHLIHFEKTGRGKKALYKVYPRKGETWALFRNWDIKWHTDAESHRSYEFEFVEILSDYVEDKGVSVAYLAKLKGFVSIFSRIVKEGNHSFQIPSQELFRFSHRVPSFKMTGQEKVGVPIGSYELDPASLPLNIEEIDAPEDLEVKVNPSGGVNMSSPDSLKSMLASDRDKSNVRRSNLVKENDDVGDHDTPSAPNQEATEIPDPQFYHFDADRSEEKFRIGQIWAFYSDEDALPKYYGQIKKIVTSPILNLHVSWLASCNLPENAIRWEKDEEMPISCGRFKIDKKHSNVYDNIFSISHQVHADTDGRNNVFVIFPRKGEVWALYRNWTAEMKRDDLVNWQYDIVEIHQESHLWIEVLVLEIVGGFNSVFRRKLNDGSAITLRIPKTELLRFSHQIPAFKLTEEHGNLRGFWELDPPALPMHYFGSS	963

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach5g01262	963	SUPERFAMILY	Chaperone J-domain	63	134	IPR036869	-
	Bach5g01262	963	MobiDBLite	consensus disorder prediction	699	726	-	-
	Bach5g01262	963	MobiDBLite	consensus disorder prediction	386	418	-	-
	Bach5g01262	963	MobiDBLite	consensus disorder prediction	681	736	-	-
	Bach5g01262	963	Gene3D	DnaJ domain	64	178	IPR036869	-
	Bach5g01262	963	MobiDBLite	consensus disorder prediction	386	433	-	-
	Bach5g01262	963	SMART	dnaj_3	66	123	IPR001623	-
	Bach5g01262	963	MobiDBLite	consensus disorder prediction	160	201	-	-
	Bach5g01262	963	PRINTS	DnaJ domain signature	87	102	IPR001623	-
	Bach5g01262	963	PRINTS	DnaJ domain signature	69	87	IPR001623	-
	Bach5g01262	963	PRINTS	DnaJ domain signature	103	123	IPR001623	-
	Bach5g01262	963	PANTHER	DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED	1	675	-	-
	Bach5g01262	963	CDD	DnaJ	67	120	IPR001623	-
	Bach5g01262	963	Pfam	DnaJ domain	67	128	IPR001623	-
	Bach5g01262	963	MobiDBLite	consensus disorder prediction	310	351	-	-
	Bach5g01262	963	Pfam	Domain of unknown function (DUF3444)	441	649	IPR024593	-
	Bach5g01262	963	Pfam	Domain of unknown function (DUF3444)	733	940	IPR024593	-
	Bach5g01262	963	ProSiteProfiles	dnaJ domain profile.	67	131	IPR001623	-
	Bach5g01262	963	MobiDBLite	consensus disorder prediction	248	371	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach5g01262	Bach-Chr5	9242563	9245454	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach5g01262	4	241	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	32.099	1.02e-25	108

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach5g01262	-		-	gmx:100795200	1075.08