Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g01256 AAAAAAATTGCACTTTTTTATTCAGTGGGCAAAAAATTTTGCCGGAAAATTGTCCTTAATCAACGCTTAAATCAGCCGCAGTTTTATCCTTTACTCACTCACCATCTTTGTAGATAGATAAAGTTTGAACCTTGTTAGGTATTTGTAACTGGACAATTGTAATCCATGCCTTTAATTCGGACCTTAATTCAGGAAATGAGATCGAGGTCGCAACGCGTGGTCCAAGACGGTTCGATGGAGGTGGTAACAGATGGCATGAAGCAGAGTTGCTGGGCTAACATGCCGCAGGAGCTGCTCAGGGAGGTGCTGATGAGGATTGAGGCATCGGAGACAACTTGGCCGCCGCGGAAGAGTGTGGTAGCTTGTGCCGGAGTGTGCCGGAGTTGGAGGGAGATCACCAAGGAGATCGTGAAGACCCCTGAACTTTCCGCTAAGATAACGTTTCCGATCTCTGTCAAGCAGCCTGGTCCAAGGGAGCATCTCCTTCAGTGTTTTATAAAGCGCAACCGGTCCACCCAAACATATTATTTGTTTCTCAGTTTAACTAACGCATTATCTGATGATGGGAAGTTCCTTTTGGCTGCACGCAAATGCAGACGTCCTACCTGCACAGATTACATAATCTCTCTAGATGCTGATGATATGTCAAGGGGAAGCAACTCTTATGTGGGGAAACTGAGATCAAACTTTCTGGGAACAAAGTTCACTATATATGATGGCCAGCCACCTCATGCAGGCGCAAAGATCACTAAAAGTCGCTCCACGAGGCTAGCAAATCTGAAACAAGTTTCACCCAGGGTCCCTACTGGTAATTATCCAGTGGCCCACGTCTCGTATGAATTAAATGTGCTTGGCTCCAGGGGGCCTCGGAGAATGCACTGCACCGTGGATGCCATTCCTGCCTCTGCAATAGAACAAGGAGGGGTAGCCCCTACACAGACTGAGTTTTCTTACTGCAACATTGATATGTTTCCTTCATTCCCATTTTTCCGTTCAAAATCAAATCGTGTAGAAAACTCCCTTTTTGGACCTCTTGGAGATAAAAAAGATGGGGTGCTAGTGTTGAAAAATAAATCTCCCAGATGGCATGAGCAGCTCCAATGTTGGTGTTTAAATTTTCATGGACGAGTTACTGTTGCCTCAGTTAAAAACTTTCAGCTGGTGGCTTCACCGCCAGATAATGTACCTGCTGGACCAGAACATGAGAAGATTATCCTCCAATTTGGAAAAGTTGGAAAGGATCTGTTTACAATGGACTACCGTTACCCTATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAACTTTGATACGAAGATTGCTTGTGAATGACTCAATTCAGGCATTTGCAAGCTGATTGAAGCAGTGACCAGATGGGGGTGAATTAAAATGAGGGTGCTGCACAGTAAAGAGTTTCAATCTGTTTTTCTGGATCGGAATCTATCAATTCTGGGAAGATCTCATGAAGCTGGAATGATTTTAAGATCTTTTTTTTTTCCCCTCTGCAATTTGTGTACCCAGTTCCCCGTGTACATAAATTTATCATTTTTATGACAGTTTGCTTTTTGTTTGGTTGCTTTGCAATATAA 1592 0.4384 MPLIRTLIQEMRSRSQRVVQDGSMEVVTDGMKQSCWANMPQELLREVLMRIEASETTWPPRKSVVACAGVCRSWREITKEIVKTPELSAKITFPISVKQPGPREHLLQCFIKRNRSTQTYYLFLSLTNALSDDGKFLLAARKCRRPTCTDYIISLDADDMSRGSNSYVGKLRSNFLGTKFTIYDGQPPHAGAKITKSRSTRLANLKQVSPRVPTGNYPVAHVSYELNVLGSRGPRRMHCTVDAIPASAIEQGGVAPTQTEFSYCNIDMFPSFPFFRSKSNRVENSLFGPLGDKKDGVLVLKNKSPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPPDNVPAGPEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSNFDTKIACE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g01256 389 CDD F-box_AtTLP-like 36 80 - -
Bach5g01256 389 Pfam F-box domain 36 83 IPR001810 GO:0005515
Bach5g01256 389 Gene3D - 29 88 - -
Bach5g01256 389 Pfam Tub family 97 384 IPR000007 -
Bach5g01256 389 ProSitePatterns Tub family signature 1. 318 331 IPR018066 -
Bach5g01256 389 PRINTS Tubby superfamily signature 300 317 IPR000007 -
Bach5g01256 389 PRINTS Tubby superfamily signature 216 243 IPR000007 -
Bach5g01256 389 PRINTS Tubby superfamily signature 346 365 IPR000007 -
Bach5g01256 389 PRINTS Tubby superfamily signature 367 389 IPR000007 -
Bach5g01256 389 PRINTS Tubby superfamily signature 167 191 IPR000007 -
Bach5g01256 389 PRINTS Tubby superfamily signature 318 334 IPR000007 -
Bach5g01256 389 PRINTS Tubby superfamily signature 151 167 IPR000007 -
Bach5g01256 389 PANTHER TUBBY-RELATED 12 387 - -
Bach5g01256 389 SUPERFAMILY Tubby C-terminal domain-like 85 389 IPR025659 -
Bach5g01256 389 FunFam Tubby-like F-box protein 93 389 - -
Bach5g01256 389 SUPERFAMILY F-box domain 29 79 IPR036047 GO:0005515
Bach5g01256 389 Gene3D Tubby Protein; Chain A 94 389 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g01256 Bach-Chr5 9144979 9148656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g01256 12 389 TUB Transcription Factor Family AT2G47900 74.278 0.0 571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bach5g01256 Tub 3.7e-112 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g01256 K19600 - gmx:100815464 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach5g01256 5 9144979 9148656 Bach5g01256 5 9144979 9148656 ECH