Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g01227 ATGAATGTGGTCCTTAGTCCTGCAGGTCTTCCTTTGCGCCCGGGGGCGCCACCTTGCACCCATTATGCACAACGTGGAGTATGTAAGTTTGGTCCTGCATGCAAATTTGATCATCCAATGGGAGCACTGAGTTATAGTCCATCTGCTTCTTCTCTGGCTGACATGCCTGTTGCACCATATCCTGTGGGTTCATCAATTGGCACTCTTGCCCCATCATCATCGTCATCAGAGTTGCGGCCTGACATTATCTCAGGAACCAGCAAGGAGTCTGTCTCATTCAGAATGTCTTCATCAATGAGTACATCAACTGGATCAGTTGGCTTGACTTTGTCAACTGTTGGATCCATTTCTCAGTCAAGTCCACAATCATCTTCTCAGAACGCTGCTCCTTTAGTGACAACCACCACAAGCAGCTTCATCTCTCACACCTCAAGCTAA 438 0.4772 MNVVLSPAGLPLRPGAPPCTHYAQRGVCKFGPACKFDHPMGALSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPDIISGTSKESVSFRMSSSMSTSTGSVGLTLSTVGSISQSSPQSSSQNAAPLVTTTTSSFISHTSS 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g01227 145 ProSiteProfiles Zinc finger C3H1-type profile. 13 41 IPR000571 GO:0046872
Bach5g01227 145 SUPERFAMILY CCCH zinc finger 17 43 IPR036855 GO:0046872
Bach5g01227 145 PANTHER PROTEIN PHOSPHATASE RELATED 3 76 - -
Bach5g01227 145 SMART c3hfinal6 13 40 IPR000571 GO:0046872
Bach5g01227 145 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 15 40 IPR000571 GO:0046872
Bach5g01227 145 Gene3D - 13 89 - -
Bach5g01227 145 MobiDBLite consensus disorder prediction 69 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g01227 Bach-Chr5 8924120 8927162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g01227 3 90 C2H2 Transcription Factor Family AT5G18550 30.769 7.65e-07 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bach5g01227 zf-CCCH 7.3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g01227 - - cave:132177087 168.703