Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g01141 GGGTTGTTTTTTGGTTAAAGGTGTTGTCCCTTGTTTGAAAGGAGGGATTTCCTTTTTAGTTTTTGGAGAATCGTAGGCAACAAGAAATAGTGATTGACTATGCGAACTTCATGGGCAGATTTGGCTGCAAATTCTGCAGCTGAAAATGCAGGTCCTGGTTCTTCTGCCAGCAATGCGGGAACTGGTAACACTTCAGCTCCTGCACGGGTATATGTTCCTCCGCATCTTAGGAACCGTCCACCCTCTGCTGAGTCCTCTGCTCCAGCGCATAGTGGCTCTACATCTGGTACTGGGCCTGGGCCTACTGCTAATGCTGGATCACGTTGGGCTGCACCTAGAAATGACAATCGTCCTGGGTATGGTGGCGGTGGTGCTGGTGGCAGTGGCCGCACAAGTGGATGGGGAAATAAAAGTGGTGGTTGGGATAATCGAGGCAAGGAGCGGGAAGTCAATCCCTTTGGAGATGAGGATGAAGCAGAACAGGCATTTAGTGAGAAGGAGAATACTGGGATAAATTTTGATGCATACGAAGACATTCCAGTGGAGACCAGTGGTGATAATGTGCCTCCGCCTGTGAATACATTTGCAGAAATTGACTTGGGTGAAGCACTTAATCTGAATATAAGACGGTGCAAATATGTGAAGCCGACACCTGTTCAGCGGCATGCTATCCCAATATCCCTTGGTGGACGAGATTTGATGGCTTGTGCACAGACTGGTTCTGGAAAGACTGCTGCCTTTTGTTTCCCTATCATCAGTGGAATTATGAGGGGACAACCTGCACAACGGCCTCGTGGGTACCGTACAGTATACCCACTTGCCCTTATTCTATCGCCAACTAGGGAGCTATCAATCCAAATACATGAAGAAGCCAGGAAGTTTTCATATCAAACGCAGGTTAGAGTGGTAGTTGCTTATGGTGGAGCACCCATAAACCAGCAGCTGCGGGATCTTGAGAGAGGGGTTGACATTCTTGTTGCAACTCCTGGGCGATTGGTAGATTTACTAGAGAGGGCTAGAGTTTCATTGCAGATGATCAGATATTTAGCCTTAGATGAGGCAGATCGGATGCTGGATATGGGATTTGAGCCTCAAATAAGGAAGATTGTAGAACAGATGGACATGCCCCCAGCAGGTGTCAGACAGACTATGCTGTTTAGTGCTACTTTTCCAAAAGAGATACAGAGATTGGCCTCTGACTTCCTTTCAAGTTATATTTTCCTGGCTGTTGGAAGAGTGGGCTCAAGTACTGATTTAATTGTCCAAAGAGTTGAGTATGTTCAGGAGTCTGACAAGAGAAGTCACCTTATGGACCTTCTTCATGCACAGAGAGCAAATGGTGCACATGGAAAGCAAGCTTTAACGTTAGTATTTGTGGAGACAAAAAAGGGAGCGGATTCGCTGGAACATTGGTTGTGTATCAATGGCTTTCCAGCAACTACTATTCATGGTGACAGAACACAGCAGGAAAGAGAACTGGCATTAAGGTCATTTAAAAGTGGAAACACCCCTATATTGGTTGCAACTGATGTGGCTGCACGTGGTCTTGATATTCCCCATGTTGCCCATGTTGTCAACTTTGATCTGCCAAATGATATTGATGATTATGTACACCGAATTGGAAGGACAGGACGAGCTGGGAAGACTGGCCTGGCGACTGCATTCTTTAATGACAACAATGCATCTTTAGCAAGGGCTTTAGCAGAGCTGATGCAAGAATCAAATCAAGAAGTACCTGCTTGGCTTTCACGGTATGCTGCACGATCTTCCTTCGGAGGAAGGAATCGTAGATCAGGAGGCCGGTTTGGTGGCCGTGATTTTCGAAGGGAAGGTTCTTTCAGTAGAGGTGGTTCTGATTACTACAGTGCAGGTAACAGCAGTGGAGGATATGGGGCTTCTGGTGGGCAAAGTGGAGGATATGGTCCTGGGGTCACTAGTGCTTGGGACTAA 1950 0.4682 MRTSWADLAANSAAENAGPGSSASNAGTGNTSAPARVYVPPHLRNRPPSAESSAPAHSGSTSGTGPGPTANAGSRWAAPRNDNRPGYGGGGAGGSGRTSGWGNKSGGWDNRGKEREVNPFGDEDEAEQAFSEKENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQPAQRPRGYRTVYPLALILSPTRELSIQIHEEARKFSYQTQVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLASDFLSSYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGAHGKQALTLVFVETKKGADSLEHWLCINGFPATTIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNDNNASLARALAELMQESNQEVPAWLSRYAARSSFGGRNRRSGGRFGGRDFRREGSFSRGGSDYYSAGNSSGGYGASGGQSGGYGPGVTSAWD 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g01141 616 SMART ultradead3 179 390 IPR014001 -
Bach5g01141 616 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 386 553 IPR001650 -
Bach5g01141 616 Pfam DEAD/DEAH box helicase 184 364 IPR011545 GO:0003676|GO:0005524
Bach5g01141 616 MobiDBLite consensus disorder prediction 1 118 - -
Bach5g01141 616 MobiDBLite consensus disorder prediction 1 32 - -
Bach5g01141 616 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 160 188 IPR014014 GO:0003724
Bach5g01141 616 SMART helicmild6 433 514 IPR001650 -
Bach5g01141 616 CDD DEADc_DDX3_DDX4 161 381 IPR044763 GO:0003724|GO:0005524
Bach5g01141 616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 532 IPR027417 -
Bach5g01141 616 CDD SF2_C_DEAD 387 523 - -
Bach5g01141 616 FunFam ATP-dependent RNA helicase RhlB 378 557 - -
Bach5g01141 616 Gene3D - 378 557 IPR027417 -
Bach5g01141 616 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 129 553 - -
Bach5g01141 616 MobiDBLite consensus disorder prediction 51 69 - -
Bach5g01141 616 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 191 375 IPR014001 -
Bach5g01141 616 FunFam Probable ATP-dependent RNA helicase DDX4 122 377 - -
Bach5g01141 616 Gene3D - 116 377 IPR027417 -
Bach5g01141 616 MobiDBLite consensus disorder prediction 591 616 - -
Bach5g01141 616 Pfam Helicase conserved C-terminal domain 399 514 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g01141 Bach-Chr5 8227412 8232695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g01141 158 546 Eukaryotic Initiation Factors Gene Family AT3G19760 31.538 5.89e-60 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g01141 K11594 - gmx:100795756 931.013