Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bach5g00982 | ATGGCAATGGAACCTCCTCCTTTCCAAGAGGCTGCGCGATGTGATGTCTGCAATAGCAGTTTCAGCGCCTTCCGGAGACGGCATCACTGTAGATGTTGTGGGAGAACACTGTGCAATGAGCATTCATCAAATCAAATGGCTTTACCACAATTTGGGATTTACTCAAATGTCAGGGTATGTGCTGATTGCTTCAATAATTTGCAATCTGGGAAGGATGTTCCACAGACTTCTTCAGATGGAGAAAACAGCATGACAAATTCAATTTCTAAACTAAATATCGATGAAAATGTACGTTCAAAGAATGCATTGACTGTGGAGGATAAGCCTGTATCAAGCATTAAAGAGTGTAAGTGTGGGATGCCTCTTTGTATTTGTGAAGCACCAGTCCCTTCCACTGATGCAGTCCCCCAGCAGAAGAAAACTGCTTCAGTTGTTACACCTCTGTCAAATCCTAAACCAAAGAAGTCAGATGCCCCAAAAAGTAGAAGCTCCAATTCAAACAGCAAGTTTAGCTCTACTTTTAACAATGGTACTTCAGAGAGACCCCAGTTGGACTATGAAGCTAGTGGAGAGGGTTTAAGAGAAGCAATTAAAAGTGGTGACACTGCTGCTGTCAAGAAACTTCTCAATCAGGGTGTAGATGCAAATTACAGAGACAAGCAAGGATTGTCTTTACTACATTTGGCTGCACTCTTCAATCAAACTGATATAGTTTTCATTCTCATGGATTCCGGGGCAAGCCTGGAGTATAAGAATGCGCAAGGAGAAACGCCTTTGGATTGTGCTCCAGCTACCTTGCAGTACAAGATGCGAAAGAAGATGGAAGAAGGTGGGGCAATGGGTCGGAGCAATTGAATAATCTACTGTTTATACCTGTAATCTACTTAAGCATTTGCTCTGGTGCCCAAAATATTACCAGTATCTTTCTCTATTCTCACAATGGAACTTTTCTTCTTCTCTATGACGTGAAAGAAGTTTTAGTTCTTCTTTTCCTGCAATGGCTTGGTATGTAATGTGGTTTATGGATGATGCAGACCTACTCATCTTTACAGCTCTGCAACTTAGGCAGTATCATATGCTTGTTTGGCGTATGACATGCAATACAAG | 1107 | 0.4173 | MAMEPPPFQEAARCDVCNSSFSAFRRRHHCRCCGRTLCNEHSSNQMALPQFGIYSNVRVCADCFNNLQSGKDVPQTSSDGENSMTNSISKLNIDENVRSKNALTVEDKPVSSIKECKCGMPLCICEAPVPSTDAVPQQKKTASVVTPLSNPKPKKSDAPKSRSSNSNSKFSSTFNNGTSERPQLDYEASGEGLREAIKSGDTAAVKKLLNQGVDANYRDKQGLSLLHLAALFNQTDIVFILMDSGASLEYKNAQGETPLDCAPATLQYKMRKKMEEGGAMGRSN | 284 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bach5g00982 | 284 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 72 | IPR013083 | - | |
| Bach5g00982 | 284 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 8 | 68 | IPR017455 | - | |
| Bach5g00982 | 284 | SMART | ANK_2a | 179 | 217 | IPR002110 | GO:0005515 | |
| Bach5g00982 | 284 | SMART | ANK_2a | 221 | 250 | IPR002110 | GO:0005515 | |
| Bach5g00982 | 284 | MobiDBLite | consensus disorder prediction | 135 | 191 | - | - | |
| Bach5g00982 | 284 | PANTHER | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 | 4 | 278 | - | - | |
| Bach5g00982 | 284 | Pfam | Ankyrin repeats (many copies) | 194 | 238 | IPR002110 | GO:0005515 | |
| Bach5g00982 | 284 | MobiDBLite | consensus disorder prediction | 135 | 150 | - | - | |
| Bach5g00982 | 284 | Pfam | FYVE zinc finger | 9 | 68 | IPR000306 | GO:0046872 | |
| Bach5g00982 | 284 | SUPERFAMILY | Ankyrin repeat | 194 | 264 | IPR036770 | - | |
| Bach5g00982 | 284 | MobiDBLite | consensus disorder prediction | 160 | 183 | - | - | |
| Bach5g00982 | 284 | SUPERFAMILY | FYVE/PHD zinc finger | 8 | 75 | IPR011011 | - | |
| Bach5g00982 | 284 | SMART | fyve_4 | 3 | 69 | IPR000306 | GO:0046872 | |
| Bach5g00982 | 284 | ProSiteProfiles | Ankyrin repeat region circular profile. | 221 | 252 | - | - | |
| Bach5g00982 | 284 | CDD | FYVE_scVPS27p_like | 7 | 64 | - | - | |
| Bach5g00982 | 284 | ProSiteProfiles | Ankyrin repeat profile. | 221 | 253 | IPR002110 | GO:0005515 | |
| Bach5g00982 | 284 | Gene3D | - | 169 | 269 | IPR036770 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bach5g00982 | Bach-Chr5 | 6966880 | 6971322 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bach5g00982 | 200 | 279 | MAP Kinase Kinase Kinase | AT3G58760 | 35.000 | 5.32e-09 | 54.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bach5g00982 | - | - | gmx:100804827 | 430.254 |