Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g00966 ATGGTTGAGCCAGTGCAGTTGTGTTCTCCATTTGTTTGTGAAATTTGCACTGAGACCAAGACGGTAGAGGAATCATTCAGCATTAATGGTTGCTCTCACGCTTATTGTACTGAGTGTATAACTATGTACGTGGCCTCTAAGCTACGGGAAAATATTATCAACATTCCGTGCCCTGTATCTGAGTGCAAAAGCTTGTTGGAACCTCATGATTGCCGTCCAATTCTTCCTACGGAAGTGTTTGATAGGTGGGGAAACGCCTTGTGTGAGGCTGTAATTCTTGCTTCTGAAAAGTTCTACTGCCCATTCGAGGACTGCTCTGCACTACTGATTAATGATGGAACAGAGGCTGTCAAGGAGTCAGAGTGTCCACATTGTTTTAGGTTGTTCTGTGCACAGTGTAAGGTGCCTTGGCATTCAGGAATTGATTGTACAGAGTTCCAGAAGGTGAACAAGGACGAGAGAGAGAGGGAAGATATCATGTTGATGGAGCTTGCCCAGAACAAGAACTGGAGGAGGTGTCCTGAGTGCAGGTTCTACGTAGAGAAGTCTGACGGCTGCATGTATATGAAATGCAGGTTAGTATCTTTTCCGTGA 594 0.4512 MVEPVQLCSPFVCEICTETKTVEESFSINGCSHAYCTECITMYVASKLRENIINIPCPVSECKSLLEPHDCRPILPTEVFDRWGNALCEAVILASEKFYCPFEDCSALLINDGTEAVKESECPHCFRLFCAQCKVPWHSGIDCTEFQKVNKDEREREDIMLMELAQNKNWRRCPECRFYVEKSDGCMYMKCRLVSFP 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g00966 197 FunFam RBR-type E3 ubiquitin transferase 8 94 - -
Bach5g00966 197 SUPERFAMILY RING/U-box 88 148 - -
Bach5g00966 197 CDD BRcat_RBR_unk 94 146 - -
Bach5g00966 197 Pfam IBR domain, a half RING-finger domain 91 143 IPR002867 GO:0008270
Bach5g00966 197 SUPERFAMILY RING/U-box 154 191 - -
Bach5g00966 197 SMART ibrneu5 81 143 IPR002867 GO:0008270
Bach5g00966 197 ProSitePatterns Zinc finger RING-type signature. 31 40 IPR017907 -
Bach5g00966 197 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 13 191 IPR031127 GO:0004842|GO:0016567
Bach5g00966 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 95 IPR013083 -
Bach5g00966 197 ProSiteProfiles TRIAD supradomain profile. 9 197 IPR044066 -
Bach5g00966 197 ProSiteProfiles Zinc finger RING-type profile. 13 61 IPR001841 -
Bach5g00966 197 Gene3D - 140 193 - -
Bach5g00966 197 SUPERFAMILY RING/U-box 10 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g00966 Bach-Chr5 6840172 6840765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g00966 13 192 C3H Transcription Factor Family AT2G19610 28.796 5.86e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g00966 K11975 - qsa:O6P43_021976 316.62