Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g00945 GGGTTTTCCCCCCTTTTTTTGTTTTTTGTTTTCATTTTCCTTTTTTTTTTTTCTTCTTCTTTTTCTTTTTTTCCTGCTGAAATACCTTTTCTTCAGTTTTCCTTCTTTCACCTTTCCTTCATTGTAATTCTGGAACTTGTACCCTAGGACTTTTCACATTACATACTACCTATCACCATTGAAGATGCACCAACAGAGGTTAAAACAACAGGCAATGATGCAGCAATCCCTCTATCACCACCCTGGTCTACTCGCCGCCCCTCAGATAGAGCCTATCTTGAGTGGAAATATGCCTCCTGCCTTTGATTCAAGTACATGCCGCTGTGTGTATGTTGGGAACATTCATCCCCAGGTTACAGACTCTCTTCTTCAAGAGGTTTTTTCAAGTACAGGTCCCATTGAAGGGTGCAAGATCATTAGAAAAGAGAAGTCGTCATATGGTTTTGTGGATTACTTCGATCGTAGATCTGCTGCAGTTGCTATTTTGTCTCTCAATGGTAGACATATTTTTGGGCAGCCTATTAAAGTCAACTGGGCATATGCTAGTAACCAGAGGGAGGATACATCAGGTCACTTCAATATTTTTGTTGGTGACCTTAGCACTGAGGTTACAGATGCTACACTGTTTTCTTGTTTTTCTGTATATCCTAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAAACTGGTCGTTCCCGGGGATTTGGTTTTGTTTCTTTTTGGAATCAACAGGAGGCTCAAAGTGCTATAAATGATTTAAACGGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAACTGGGCCACAAAAGGGGCTAATAATGGCAATGATGACAAGCAGACTTCAGATTCAAAAAGTGTTGCAGAGTTAACAAATGGAACATCTGAAGAAGGTCAAGAAAAGGCCAATGATGATACTCCAGAGACGAATCCTCAGTATACTACTGTCTATGTTGGCAATCTTGCTCCAGAGGTTACTTCTGTTGACCTCCACCATCTTTTTCATGCTCTGGGTGCTGGAACTATTGAGGATGTTCGGGTGCAAAGAGATAAAGGTTTTGGATTTGTTAGATACAGTACACATGCTGAAGCAGCACTTGCTATACAGACGGGTAATGTTCGGATCCTGTCTGGCAAGCCTATCAAGTGCTCGTGGGGTAGCAAGCCTACTCCTCCAGGGACAGCGTCTACTCCTCTTCCCCCGCCTGCAGCCGCACATATGCCAGGCTTTTCGGCATATGAACGACAAATGGCTCTGAGCAAGATGGGTGGTGCTCAAGCTCTTATTCATCATGGTCAGCATGCGCTGAAGCAGGCAGCCATGGGAATGGGTGCCCCTGGGGCTAGTTTTGGTGCAGGTTACCAGGATCTTGCAACTTCCCAGCACTTGACGTATTATCAGTAAATTGGATTGTGTAACTCTCTTCAGTCTCATACAAGGGAGATTAATGTCATTTACAATCTCTAGGAGCTTTCTATCACTTCAACTTCTACCTTCGTTTTGTTTTGTAACTTGTGTTTTATTTTATTTATGGTCGCTAACTCGCTATACTTGTATTACTACTTCATACTTAACTGCTATGGATGATCGGC 1593 0.4262 MHQQRLKQQAMMQQSLYHHPGLLAAPQIEPILSGNMPPAFDSSTCRCVYVGNIHPQVTDSLLQEVFSSTGPIEGCKIIRKEKSSYGFVDYFDRRSAAVAILSLNGRHIFGQPIKVNWAYASNQREDTSGHFNIFVGDLSTEVTDATLFSCFSVYPSCSDARVMWDQKTGRSRGFGFVSFWNQQEAQSAINDLNGKWLGSRQIRCNWATKGANNGNDDKQTSDSKSVAELTNGTSEEGQEKANDDTPETNPQYTTVYVGNLAPEVTSVDLHHLFHALGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQTGNVRILSGKPIKCSWGSKPTPPGTASTPLPPPAAAHMPGFSAYERQMALSKMGGAQALIHHGQHALKQAAMGMGAPGASFGAGYQDLATSQHLTYYQ 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g00945 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 327 IPR000504 GO:0003723
Bach5g00945 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Bach5g00945 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Bach5g00945 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 321 IPR000504 GO:0003723
Bach5g00945 406 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 235 328 - -
Bach5g00945 406 SMART rrm1_1 254 323 IPR000504 GO:0003723
Bach5g00945 406 SMART rrm1_1 47 116 IPR000504 GO:0003723
Bach5g00945 406 SMART rrm1_1 132 205 IPR000504 GO:0003723
Bach5g00945 406 CDD RRM1_PUB1 48 118 - -
Bach5g00945 406 Gene3D - 1 131 IPR012677 -
Bach5g00945 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Bach5g00945 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Bach5g00945 406 MobiDBLite consensus disorder prediction 208 251 - -
Bach5g00945 406 FunFam Oligouridylate-binding protein 1C 230 331 - -
Bach5g00945 406 CDD RRM2_PUB1 130 209 - -
Bach5g00945 406 MobiDBLite consensus disorder prediction 208 236 - -
Bach5g00945 406 FunFam oligouridylate-binding protein 1-like isoform X2 129 225 - -
Bach5g00945 406 SUPERFAMILY RNA-binding domain, RBD 45 211 IPR035979 GO:0003676
Bach5g00945 406 SUPERFAMILY RNA-binding domain, RBD 245 332 IPR035979 GO:0003676
Bach5g00945 406 Gene3D - 232 331 IPR012677 -
Bach5g00945 406 Gene3D - 132 231 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g00945 Bach-Chr5 6664778 6669310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g00945 48 321 Eukaryotic Initiation Factors Gene Family AT3G16380 26.804 4.75e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g00945 K13201 - zju:107404978 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach5g00945 5 6664778 6669310 Bach5g00945 5 6664778 6669310 ECH