LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach5g00909	AATCTTCCCCCTACTTACCGTTCGTGACAATGGCGACTCAGATGAGCAAGAAGAGAAAGTTCGTAGCTGATGGAGTTTTCTTCGCCGAGCTGAATGAGGTTCTGACCAGAGAGCTTGCTGAGGATGGATACTCAGGTGTTGAGGTTAGAGTTACCCCGATGCGCACCGAGATCATTATCAGGGCCACTCGAACCCAGAACGTACTAGGTGAGAAAGGTAGGAGAATTAGGGAGCTGACCTCAGTGGTACAGAAGAGATTTAAGTTTCCGGAGAACAGTGTCGAGCTTTATGCTGAGAAGGTGAACAACAGGGGTCTTTGCGCCATTGCCCAGGCTGAGTCCCTTCGCTACAAGCTTCTTGGTGGTCTCGCTGTACGGAGGGCTTGCTACGGTGTTTTGAGGTTCATTATGGAAAGTGGTGCCAAGGGATGCGAGGTCATTGTTAGTGGAAAACTGAGGGCTCAGAGAGCCAAGTCCATGAAGTTCAAAGATGGATACATGATTTCTTCTGGACAACCAGTCAAGGATTACATTGACTCTGCAGTAAGACATGTACTCCTCAGACAGGGGGTTCTTGGTATCAAGGTGAAGATCATGCTTGATTGGGATCCTAAAGGAAAGCAGGGTCCCAAAACACCTCTTCCTGATCTTGTCACAATTCACCTTCCAAAAGAGGAAGAAGAATACGTACGGCCTACTGCTATTTATCCAACTGAGATTGAGGTTCCAGTTCCTGTTCCTGTGGCTTAAGGTGCTTTTTTGACCGAACCGGTTTAGCGGTTCCTGCGAAATTTATATTATGAGTGCTTAGTTTTTCATGGAAGCAATGCTGGGTGCTAAGGCGTGTGCGTTAAATTTTTATGGTTTGTAAACTGTTGCAGAAATTTTGTTTTATTCTAGTTATAGAATTTTC	912	0.4583	MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHLPKEEEEYVRPTAIYPTEIEVPVPVPVA	239

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach5g00909	239	Pfam	KH domain	20	93	IPR004044	GO:0003723
	Bach5g00909	239	CDD	KH-II_40S_S3	5	95	-	-
	Bach5g00909	239	SUPERFAMILY	Ribosomal protein S3 C-terminal domain	93	191	IPR036419	-
	Bach5g00909	239	Gene3D	-	93	219	IPR036419	-
	Bach5g00909	239	SUPERFAMILY	Prokaryotic type KH domain (KH-domain type II)	10	99	IPR009019	GO:0003723
	Bach5g00909	239	NCBIfam	30S ribosomal protein S3	8	210	IPR005703	GO:0003735\|GO:0006412\|GO:0015935
	Bach5g00909	239	FunFam	40S ribosomal protein S3	1	92	-	-
	Bach5g00909	239	FunFam	40S ribosomal protein S3	93	227	-	-
	Bach5g00909	239	Pfam	Ribosomal protein S3, C-terminal domain	106	188	IPR001351	GO:0003735\|GO:0006412
	Bach5g00909	239	ProSitePatterns	Ribosomal protein S3 signature.	147	183	IPR018280	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach5g00909	Bach-Chr5	6396691	6399113	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach5g00909	1	233	Cytoplasmic Ribosomal Protein Gene Family	AT5G35530	86.695	8.89e-152	420

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach5g00909	K02985		-	gmx:100795045	437.958

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