Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g00908 ATGTCGGTGAATCTCACACCGAACTCGATCCCGGCGATTGTTGCCGGCGATGTCAACTCGAAGCCGCTGGTGCAGGTCTTGGATATCAAGCAAATTGCGAACAAGGCGAACCAGGAGAGGTACCGGCTTTTGCTTTCCGATGCAGTTTTGGCTCAGCACGCTATGGTCGCGACTCAGCTCAATGACCGAGTTAGAACCGGTCGAGTTAAGACTGGTTCCGTTGTTCAGTTAATTGAGTATATCTGCAGCCCTGTGCAGAACCGCAAGATTATTGTGGTACTCAACATGGAAACTATAATACCAGACTGTGAGATCATTGGGAATCCAAAGTCATTTGGGGAATCTGATTTAACAGGTCAGAAAGCGTTACCTAATATGCAGCAGCTGACCAGGGTTAATAATAATAATTTGGCTGTCCAAAATCCAAGTGATAATGTGCAGAGTTTCCGACCGACTGTTCAACCTCCTTACCAACCACCTCCAGTTTACAAAAATCGTGGTGCAATTTTGAAGAACGAGGCACCAGCACGCATCATTCCTATAGCTGCTTTAAATCCTTATCAGGGTCGGTGGGCTATCAAGGCAAGAGTAACTGCAAAAGGGGATCTGCGCCGTTATAACAATGCTCGTGGAGATGGGAAGGTCTTCTCATTTGACCTCCTTGATTCTGATGGAGGTGAAATACGAGTGACTTGCTTCAATGCTGTTGTTGATCGATTCTATGATGCAGTTGAGGTAGGTAAAGTTTACTTGATATCCAAAGGTAGCTTAAAACCTGCACAGAAGAACTTCAACCATTTGAAGAATGAATGGGAAATACTTTTGGATTCAAATTCAACTGTAGAGCTTTGCGCTGATGAAGATGGTTCTATACCTAGACAGCAGTTCTCATTAAGGCCTATCAATGAAATTGAGAATGTTGAGAATAACTCTATACTTGATGTGATTGGGGTTGTAATATCTGTGAATCCATCAGTTCCCATCTTGAGAAAGAATGGAATGGAAACCCAGAGAAGAGTATTGAATCTAAAGGATTGGTCTGGCAGGAGTGTCGAGCTAACCTTTTGGGGTGATTTTTGCAACAGGGAGGGTCAGAAGTTGCAGGAGATGGTCGATACAGGGTTCTTCCCTGTTCTGGCTGTCAAAGCTGGGAAGGTTAGTGATTTTAGTGGAAAATCTATAGGGACCATTTCTTCTACACAGCTCTTTATAAATCCTGATTTCCCTGAGGCTCGAAGATTAAGAGACTGGTTTGATCAAGGGGGGAAGGATGCCGCTTCTCTGTCCATTTCTAAGGAGATCATTCCGGGAGAATCTAAGAATGAGATAAGCAAAACTGTGTCTCAGATCAAGGATGAAGGTCTGGGACGATCAGATAAGCCAGACTGGATAACAGTGAGGGCAACTATATCTTTCATTAAGACAGATACTTTCTGTTACACTGCTTGCCCCCTGATGATTGGAGATCGACAATGCAATAAGAAAGTGACAAGGTCAGGAAATACAAGATGGCATTGTGATAGATGCAATCAAGAGTTTGAGGAGTGTGATTACCGATTTCTTCTTCAAGCCCAAATTCTGGATCATACAGGAATAACTTGGGTAACTGCTTTCCAGGAATCAGGGGAAGAGATTTTGGGTCATTCAGCAAAAGAGCTTTACTTGTTGAAGTACGAACAGCAGGATGACGAGAAGTTTGGTGAAATAATCCGGAGAAGCCTCTTTAATCAATATTTGTTTAGGCTGAAAATCAAAGAGGAACTTTATAGTGATGAACAGAGGGTGAAGATTACAGTAGTCAAGGCAGATAAGGTGAATTATACTTCTGAGAGTAGACATATGCTTGATTTTATTTCAAAGTTTTGTCAGTAA 1872 0.4263 MSVNLTPNSIPAIVAGDVNSKPLVQVLDIKQIANKANQERYRLLLSDAVLAQHAMVATQLNDRVRTGRVKTGSVVQLIEYICSPVQNRKIIVVLNMETIIPDCEIIGNPKSFGESDLTGQKALPNMQQLTRVNNNNLAVQNPSDNVQSFRPTVQPPYQPPPVYKNRGAILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYDAVEVGKVYLISKGSLKPAQKNFNHLKNEWEILLDSNSTVELCADEDGSIPRQQFSLRPINEIENVENNSILDVIGVVISVNPSVPILRKNGMETQRRVLNLKDWSGRSVELTFWGDFCNREGQKLQEMVDTGFFPVLAVKAGKVSDFSGKSIGTISSTQLFINPDFPEARRLRDWFDQGGKDAASLSISKEIIPGESKNEISKTVSQIKDEGLGRSDKPDWITVRATISFIKTDTFCYTACPLMIGDRQCNKKVTRSGNTRWHCDRCNQEFEECDYRFLLQAQILDHTGITWVTAFQESGEEILGHSAKELYLLKYEQQDDEKFGEIIRRSLFNQYLFRLKIKEELYSDEQRVKITVVKADKVNYTSESRHMLDFISKFCQ 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g00908 623 CDD RPA1_DBD_A 180 283 - -
Bach5g00908 623 Gene3D - 3 113 IPR012340 -
Bach5g00908 623 SUPERFAMILY Nucleic acid-binding proteins 445 621 IPR012340 -
Bach5g00908 623 Pfam Replication factor-A protein 1, N-terminal domain 5 99 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bach5g00908 623 SUPERFAMILY Nucleic acid-binding proteins 295 423 IPR012340 -
Bach5g00908 623 Gene3D - 177 287 IPR012340 -
Bach5g00908 623 NCBIfam replication factor-a protein 1 (rpa1) 5 620 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bach5g00908 623 PANTHER REPLICATION FACTOR A 1, RFA1 191 599 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bach5g00908 623 FunFam Replication protein A subunit 290 429 - -
Bach5g00908 623 Pfam Replication factor-A C terminal domain 463 614 IPR013955 -
Bach5g00908 623 Pfam OB-fold nucleic acid binding domain 192 273 IPR004365 GO:0003676
Bach5g00908 623 Gene3D - 290 429 IPR012340 -
Bach5g00908 623 CDD RPA1_DBD_C 447 620 IPR047192 -
Bach5g00908 623 FunFam Replication protein A subunit 177 286 - -
Bach5g00908 623 CDD RPA1N 10 100 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bach5g00908 623 Gene3D - 432 622 IPR012340 -
Bach5g00908 623 FunFam Replication protein A subunit 430 621 - -
Bach5g00908 623 Pfam Replication protein A OB domain 301 405 IPR031657 -
Bach5g00908 623 CDD RPA1_DBD_B 312 419 - -
Bach5g00908 623 FunFam Replication protein A subunit 4 113 - -
Bach5g00908 623 SUPERFAMILY Nucleic acid-binding proteins 177 290 IPR012340 -
Bach5g00908 623 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g00908 Bach-Chr5 6391405 6394132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g00908 26 618 Core DNA Replication Machinery Family AT2G06510 71.615 0.0 912
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g00908 K07466 - zju:107409151 1018.45