Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g00899 CTTCTCCATAAACATCCCTTGACAACTTTACTATTTACCACCCAGTCCTTTCCTTCATCATCCTTCGCGAATCACCGTAATTATTTGTTTTTCCTTTTCGCATTTTCCATTGTTCGGAAGCGAAAGCTCTGAATCTCTAGGAACATGGACGGAGGAGCTCCGGACAGCCCTCGCACGGTGGAGGAGGTTTTCAGAGACTTCAAAGGCCGTAGGGCCGGCATGATCAAGGCCCTCACTACTGATGTTGAAGAATTCTACCAGCAGTGTGATCCTGAAAAGGAGAATCTCTGCCTGTATGGATTCCCTAATGAAACATGGGAAGTCAACTTACCTGCTGAAGAAGTTCCTCCAGAACTTCCTGAGCCTGCTTTAGGAATAAACTTTGCTAGGGATGGGATGCAAGAAAAAGACTGGCTATCTTTGGTTGCTGTTCACAGTGATGCATGGTTACTAGCTGTGGCTTTCTATTTTGGGGCAAGATTTGGTTTTGATAAAGCTGACAGGAAACGCCTGTTCACTATGATTAATGATCTGCCAACAATATTTGAGCTTGTGACTGGACCTGCAAAGAAACAAGTAAAGGAAAAGTCATCAGTTTCAAATCACACCAGCAACAAATCAAAGTCTGGTTCAAAAGGGCGAGGATCTGACTCAGTAAAGAATTTAAAGCAAGCCAAGGATGAGGATGAGGGATTGGATGAAGAAGATGAGGAGGAGCATGGGGAGACCTTGTGTGGTGCGTGTGGTGAGAACTATGCATCTGATGAGTTCTGGATTTGTTGCGACATATGTGAGAAGTGGTTCCATGGCAAGTGCGTGAAGATCACTCCTGCCAGGGCCGAGCACATCAAGCAGTACAAGTGTCCCTCATGCACCAACAAAAGGGCACGGCCTTGATATCATAGGGGATATTGGTTAGTTCTCATCTCTGTAACTCTACCTTGTTGGACTACTAACTAGTTAGTTGCGTAGGTTTTCCTGTATTGTGCCAGGTTGGTGTGGCATATATGTTATGTACCACTTTGGTCTTGTGAACTTATGTGGGTATATTATTAATGTTTAGTAGTTTGCAGGTTCTGAATGTGACTCCAAGCTTCATCTTGGACTGGGATATTTA 1117 0.4432 MDGGAPDSPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNETWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFTMINDLPTIFELVTGPAKKQVKEKSSVSNHTSNKSKSGSKGRGSDSVKNLKQAKDEDEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCTNKRARP 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g00899 250 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Bach5g00899 250 ProSitePatterns Zinc finger PHD-type signature. 197 243 IPR019786 -
Bach5g00899 250 MobiDBLite consensus disorder prediction 150 170 - -
Bach5g00899 250 FunFam PHD finger alfin-like protein 189 245 - -
Bach5g00899 250 ProSiteProfiles Zinc finger PHD-type profile. 194 246 IPR019787 -
Bach5g00899 250 SUPERFAMILY FYVE/PHD zinc finger 186 247 IPR011011 -
Bach5g00899 250 MobiDBLite consensus disorder prediction 145 190 - -
Bach5g00899 250 PANTHER CPG BINDING PROTEIN 8 249 IPR045104 GO:0006355|GO:0042393
Bach5g00899 250 SMART PHD_3 196 244 IPR001965 -
Bach5g00899 250 CDD PHD_AL_plant 196 246 IPR044104 -
Bach5g00899 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 245 IPR013083 -
Bach5g00899 250 Pfam PHD-finger 197 246 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g00899 Bach-Chr5 6335912 6340332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g00899 1 249 Alfin-like Transcription Factor Family AT3G42790 75.697 1.82e-123 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Bach5g00899 Alfin 3.7e-70 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g00899 K26274 - vvi:100852794 441.425