Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g00884 ATGCGTAGTAGTTCCAACAAGGGAACGAATCAGATCCAATCAGGAAAAATGATAGATTGGAATATTGATTTCTTGCAGGAATGGTGTGGGTATCTTCTAGGGTTTCTGGCAAAAGCGGCTTCAGGGATGCGTATACATTGGGAAATGCCAAACACGGACTACTACAGTCTTGTTGCCTTCGTTTTTTTACTGATCAACCAGTTTTGTCATAAAAAAGTCATGGCAGGCTTGGCACCTGAAGGTTCACAGTTCGATGCTAAACAGTTTGATGGCAAACAGTTTGATGCCAAAATGTCCGAATTACTTACAACTGATGGAGAGGATTTCTTTACATCTTATGATGAGGTTTACGATAGCTTTGATGCTATGGGCTTGCAAGAAAATCTCCTGAGGGGCATTTATGCATACGGTTTTGAGAAGCCATCAGCTATTCAGCAGAGGGGAATAGTTCCATTCTGCAAGGGACTTGATGTCATTCAACAGGCTCAATCTGGAACTGGAAAGACTGCAACTTTCTGCTCGGGGATTCTGCAGCAACTTGACTACAGTTTGACAGAATGTCAGGCCTTGGTTTTAGCACCAACTCGGGAGCTTGCTCAGCAGATTGAAAAAGTTATGCGAGCACTTGGAGATTATCTTGGTGTGAAGGTGCATGCTTGTGTGGGAGGAACCAGTGTTCGTGAAGACCAACGCATTCTATCAAGTGGTGTTCATGTTGTTGTTGGTACTCCTGGCCGTGTATTTGATATGCTGCGCAGGCAGTCTCTTCGACCAGATTACATAAAGATGTTTGTATTGGATGAAGCAGATGAAATGCTTTCTCGAGGTTTTAAAGACCAGATCTATGATATATTCCAGCTGCTGCCATCCAAGATTCAGGTGGGAGTTTTCTCTGCTACAATGCCTCCTGAGGCCCTTGAGATCACGAGGAAGTTTATGAACAAACCTGTGAGGATCCTTGTGAAGCGTGATGAACTCACCTTAGAGGGTATAAAGCAATTTCATGTCAATGTTGAGAGAGAGGAATGGAAACTGGACACACTCTGTGATCTTTATGAGACATTAGCCATCACTCAGAGTGTCATTTTTGTCAACACCAGAAGGAAGGTTGATTGGCTTACTGATAAGATGCGAAGCCGGGACCATACAGTCTCTGCGACCCATGGAGACATGGACCAGAATACCAGAGACATCATCATGCGTGAATTCCGTTCTGGATCTTCCCGTGTTTTGATAACAACTGATCTCTTGGCGCGTGGTATTGATGTCCAGCAAGTGTCTCTTGTTATAAATTATGATCTCCCAACACAGCCTGAGAATTATCTCCATCGTATTGGGCGTAGTGGAAGGTTTGGTAGGAAAGGTGTTGCCATCAACTTTGTGACAAAGGATGATGATAGAATGCTGTTTGACATCCAGAGGTTTTATAATGTGGTAATTGAAGAGCTGCCATCAAATGTTGCTGAACTCCTCTGA 1476 0.4363 MRSSSNKGTNQIQSGKMIDWNIDFLQEWCGYLLGFLAKAASGMRIHWEMPNTDYYSLVAFVFLLINQFCHKKVMAGLAPEGSQFDAKQFDGKQFDAKMSELLTTDGEDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEREEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDDRMLFDIQRFYNVVIEELPSNVAELL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g00884 491 CDD DEADc_EIF4A 122 320 - -
Bach5g00884 491 PANTHER RNA HELICASE 100 475 - -
Bach5g00884 491 FunFam Eukaryotic initiation factor 4A-III 326 491 - -
Bach5g00884 491 Gene3D - 327 491 IPR027417 -
Bach5g00884 491 SMART helicmild6 371 452 IPR001650 -
Bach5g00884 491 Pfam DEAD/DEAH box helicase 143 304 IPR011545 GO:0003676|GO:0005524
Bach5g00884 491 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 265 273 IPR000629 -
Bach5g00884 491 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 319 IPR014001 -
Bach5g00884 491 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 491 IPR001650 -
Bach5g00884 491 Pfam Helicase conserved C-terminal domain 344 452 IPR001650 -
Bach5g00884 491 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 118 146 IPR014014 GO:0003724
Bach5g00884 491 Gene3D - 108 326 IPR027417 -
Bach5g00884 491 CDD SF2_C_DEAD 331 461 - -
Bach5g00884 491 SMART ultradead3 137 334 IPR014001 -
Bach5g00884 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 472 IPR027417 -
Bach5g00884 491 FunFam Eukaryotic initiation factor 4A-II 106 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g00884 Bach-Chr5 6217519 6223488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g00884 74 491 Eukaryotic Initiation Factors Gene Family AT1G72730 87.351 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g00884 K03257 - gmx:100788218 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach5g00884 5 6217519 6223488 Bach2g01488 2 23844545 23854180 BWGD
Bach5g00884 5 6217519 6223488 Bach5g00884 5 6217519 6223488 ECH