Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g00584 ATGGCATGGTCTAATGCTGGTATCGACTTTACCCAGAAGAAGAATCGCTACGTCCCTCCACAGCACAGGAGCAATACAATTTCTGGTTTCAACAACGCAAACTCTTATACGTTCTGTGATGAGTCAGCTCAGTCTGGTTTTTCGCCTTTCTACCATTCTGGTTCTGGACAACATGGCTGGGCTGGTCCCAGTAATGGCCACTTTAGCACTACTGGCCGTGGTCGCGGTCGAGCCTGTCGGTTCGGTCGTCAGGAAGGGCTTATGGGGTCGAGCCCTTACCCCATCCGGGACGCGGTCGACGAGCTAGAGGTGATCGAGGAAGATACAAACGTTGGGCGTATCAATTTCGATGCATATGAAGATATCCCAGTTGAGGCCAGTGGCTCTGACATATCCCCACCAGTCAATACCTTCGCAGAACTTGACTTGGACGAGGGTTTGAACAAGAATATCAGGCGATGCAAGTACGTAAAGCCCACTCCGATTCAGCGTCATGCTATACCCAATGCCGTTGCAGGCCGTGACTTGATGGCTTGTGCGCAGACCGGGTCAGGGAAGACTGCCGCGTTCTGTTTTCCCATTATATCTGGGATATTAAAGAGTCGTTTAAGCTTGCCGCCGGCGTCTCGTGGCGGCGGAATTGCATATCCTTCTGCGCTCATCCTGTCTCCAACTAGGGAGTTGTCATGTCAGATACATGATGAGACGAAGAAGTTTGCATATCAGACTGGAGTAAAGGTTGCTGTTGCTTATGGTGGAGCACCGATTGTTAAGCAGCTACGCAGTATAGAAAGGGGTCTGGACATTTTAGTTGCAACTCCTGGGCGCTTGGTGGATATAATCGAGAGAGGAAGGGTTTCACTAGCAAGAATAAAATATTTGGCTTTGGATGAGGCTGATCGTATGTTAGACATGGGTTTTGAGCCTCAAATAAGGAAGATTGTTGAGCAAATGGACATGCCTCGGCCAGGTGTTAGACAGACTATGCTTTTCAGTGCTACATTCCCAAATGATATACAGACGCTTGCATCTGACTTTCTTTCAAACTACATTTTCCTGGCTGTTGGAAGAGTTGGTTCAAGCACTGAACTGATTGTACAGAAAGTCGAACTTGTTCAGGATATTGACAAAAGAAACTATCTTTTGGATCTTCTCCGTTCTCAGAGGGCAAATGGAGCCCACGGAAAGCAAGCTTTGACTCTAGTGTTCGTTGCTACAAAGAAAGGAGCTGATGCTTTAGAATCTTGGCTGTCAAGAAAAGGTTTTCCAGCTACTGCAATACATGGTGACAAAGTTCAAGTGGAGAGAGAACGAGCATTAAAATCTTTCAAGACTGGTGCTACTCCAATCTTGGTAGCGACTGATGTTGCTTCCCGAGGCCTGGATATACCACACGTAGCACATGTTATCAACTTTGACTTGCCGAGAGCCGTAGATGACTACGTTCACAGGATTGGCCGAACTGGTCGTGCTGGTAAGTCTGGTTTGGCCACTGCCTTCTTCAGTGATAACAACGCCCCTCTTTCGAAGGCCCTTGTTGGACTCTTGCAAGAAGCAAACCAAGATGTTCCCTCTTGGCTCAGCCAATACGCTGAGACCTTAACATCTGTTGGTCGTAGCAGTAGGAGCCAACGATATAGTCGTGGCAAGCATGGTGGCCGTGACTTCCGAAGTGTCACTGAACCAGAGGTCGAGAAATACAACGACTTGATTACTTATGGCGATGGTGATCATGCTGTGGAGTCTTATACTGATACCTGTTATGATATGGCAAACTCATACAATGATTCCTCTTGTGATATCACAAACACATGCCTTGCTAGCGGTTATGATTATGCTGATGCTGATACTGATACTGATCTATATAGGGCTGGGACGACTGAAGATGGGTTAAACGGATATGCATCTATTGTTGCCACAGGATGGGACTAG 1932 0.4731 MAWSNAGIDFTQKKNRYVPPQHRSNTISGFNNANSYTFCDESAQSGFSPFYHSGSGQHGWAGPSNGHFSTTGRGRGRACRFGRQEGLMGSSPYPIRDAVDELEVIEEDTNVGRINFDAYEDIPVEASGSDISPPVNTFAELDLDEGLNKNIRRCKYVKPTPIQRHAIPNAVAGRDLMACAQTGSGKTAAFCFPIISGILKSRLSLPPASRGGGIAYPSALILSPTRELSCQIHDETKKFAYQTGVKVAVAYGGAPIVKQLRSIERGLDILVATPGRLVDIIERGRVSLARIKYLALDEADRMLDMGFEPQIRKIVEQMDMPRPGVRQTMLFSATFPNDIQTLASDFLSNYIFLAVGRVGSSTELIVQKVELVQDIDKRNYLLDLLRSQRANGAHGKQALTLVFVATKKGADALESWLSRKGFPATAIHGDKVQVERERALKSFKTGATPILVATDVASRGLDIPHVAHVINFDLPRAVDDYVHRIGRTGRAGKSGLATAFFSDNNAPLSKALVGLLQEANQDVPSWLSQYAETLTSVGRSSRSQRYSRGKHGGRDFRSVTEPEVEKYNDLITYGDGDHAVESYTDTCYDMANSYNDSSCDITNTCLASGYDYADADTDTDLYRAGTTEDGLNGYASIVATGWD 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g00584 643 SMART ultradead3 155 368 IPR014001 -
Bach5g00584 643 Pfam DEAD/DEAH box helicase 160 341 IPR011545 GO:0003676|GO:0005524
Bach5g00584 643 CDD DEADc_DDX3_DDX4 137 359 IPR044763 GO:0003724|GO:0005524
Bach5g00584 643 Pfam Helicase conserved C-terminal domain 377 492 IPR001650 -
Bach5g00584 643 Gene3D - 96 354 IPR027417 -
Bach5g00584 643 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 377 531 IPR001650 -
Bach5g00584 643 FunFam ATP-dependent RNA helicase RhlB 356 534 - -
Bach5g00584 643 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 136 164 IPR014014 GO:0003724
Bach5g00584 643 FunFam Probable ATP-dependent RNA helicase DDX4 98 355 - -
Bach5g00584 643 Gene3D - 355 534 IPR027417 -
Bach5g00584 643 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 167 353 IPR014001 -
Bach5g00584 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 507 IPR027417 -
Bach5g00584 643 CDD SF2_C_DEAD 365 501 - -
Bach5g00584 643 SMART helicmild6 411 492 IPR001650 -
Bach5g00584 643 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 128 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g00584 Bach-Chr5 3945855 3949260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g00584 118 508 Eukaryotic Initiation Factors Gene Family AT3G19760 30.357 2.03e-56 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g00584 K11594 - qsa:O6P43_023075 804.283