Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g00546 ATGACGATTGACGACGATAGTTCTATCTATATTGGAGGTCTTCCCTACGACACCACTGAAGATACTCTTCGAACTGTCTTTGATTTGTATGGCGCCATTGTTGACATCAAGATTATTAATGATCAACGGACAAGGGGCAAATGTTATGGTTTTGTTACTTTCACAAATACAAGGTCTGCAATGGATGCAATCAATGACATGAATGGGAGGGCCATTGGTGGACGTCTGGTTAAAGTAAGTGGGGTGAGGACTCGAGGTGGAGGATCCCGTTTTGGTAGACAACATTTTCCTCATGATGTTGACCGGAATGGAGACTGGGATCGTGGTAGAGGTCGAGACAGAGATTACAATCAAAACAGTGATTGGTCCGGAGAACGTGATAGGTCTCGAGATCGTGAGCAGGACAAGGATAGAAGATATGAACGCATTCGAGATCATGATCCACCTAGAGAATCTTTGCCGGGCAAAGATCGGAGTCGAGAGGTAGATAGAGTAGACGATGGAATAGAATACAGCACTGCACATGGTGAAGATATGGAAAGAGACTATCACTTAAATTTGGATTCAGAGAGGAAGATGGATAGGACCAATGATATTGATAGAAGTTTTGATAATGACAGAAATGAACAATCGAGAAGAAATAATAGTGTTAGTATTTATCACTCATTAGATTCAGACGGCAATCACAACGATCAGGTAGAAGGTGAATTAGAGACATCAACTCAGAGGGTTGATCAACTCGAGAAAGAGGTTTCTCAGCTGGAAGAGAGGTCAGAAGAGAGACGACATCTTATTACAGATTTACAAAAGCAGTCTAGGAAATTGGAAGATGCATTAGTTAATGCAAAGAAATACTCTTCATATCGTCAGACACAGCTGACCAAGCTACAGAAATGTCTTCTGCAAGTGAAAGACTACACTGAACGGCTTAAGACCTGTGAAAAGGAACTTCAGGCTCTGGTTGATACAGCAACGTTGGAGGGTGATGGTGATGCTGTGGGCTTAAATGATGGACAAGTCACTATTTGA 1029 0.4208 MTIDDDSSIYIGGLPYDTTEDTLRTVFDLYGAIVDIKIINDQRTRGKCYGFVTFTNTRSAMDAINDMNGRAIGGRLVKVSGVRTRGGGSRFGRQHFPHDVDRNGDWDRGRGRDRDYNQNSDWSGERDRSRDREQDKDRRYERIRDHDPPRESLPGKDRSREVDRVDDGIEYSTAHGEDMERDYHLNLDSERKMDRTNDIDRSFDNDRNEQSRRNNSVSIYHSLDSDGNHNDQVEGELETSTQRVDQLEKEVSQLEERSEERRHLITDLQKQSRKLEDALVNAKKYSSYRQTQLTKLQKCLLQVKDYTERLKTCEKELQALVDTATLEGDGDAVGLNDGQVTI 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g00546 342 Gene3D - 2 151 IPR012677 -
Bach5g00546 342 PANTHER GEO13361P1-RELATED 7 143 - -
Bach5g00546 342 SUPERFAMILY RNA-binding domain, RBD 4 113 IPR035979 GO:0003676
Bach5g00546 342 MobiDBLite consensus disorder prediction 219 246 - -
Bach5g00546 342 MobiDBLite consensus disorder prediction 92 189 - -
Bach5g00546 342 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
Bach5g00546 342 CDD RRM_SF 9 80 - -
Bach5g00546 342 Gene3D - 228 329 - -
Bach5g00546 342 MobiDBLite consensus disorder prediction 85 189 - -
Bach5g00546 342 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Bach5g00546 342 SMART rrm1_1 8 80 IPR000504 GO:0003723
Bach5g00546 342 MobiDBLite consensus disorder prediction 227 246 - -
Bach5g00546 342 Coils Coil 230 285 - -
Bach5g00546 342 Coils Coil 296 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g00546 Bach-Chr5 3751566 3754822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g00546 7 73 Eukaryotic Initiation Factors Gene Family AT1G22760 35.821 8.56e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g00546 - - vun:114179118 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach5g00546 5 3751566 3754822 Bach5g00546 5 3751566 3754822 ECH