Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g00489 ATGGGTAGAGGGAAGGTTGAGCTGAAGAGGATAGAAAACAAAATTAACAGGCAGATCACTTTTACCAAGAGAAGAAATGGACTACTCAAGAAGGCTTATGAGCTCTCAGTCCTTTGTGATGCTGAGGTTGGCCTCATCATCTTCTCCAATCGTGGCAAGCTCTATGAGTTCTGTAGCGGCAACAGCATGATGAAAACACTGGAGAAGTACCAGAGGTACAGTTATGGTGCTCTGCAATCCACCCGGCCAACCAGTGACACTCAGAGCAGCTTCCAGGATTATTTGAGACTAAAAGCCAAGGTAGAACTGCTCCAACGTTCACAGAGAAACCTCCTTGGGGAAGACCTGGCACAAATGAATACAAAGGACCTTGATCAGCTTGAAAATCAACTCGACGTAGCACTGAGAAATATTAGGTCTACAAAGACTCATGTCATGCTTGATCAACTTGCTGATCTTCAGAATCGGGAAAAGGCGCTTGAAAAAACTAATAAAGCCTTGAGGAAGAAGGTAGCTTCTCATCCAATTTCTGCGTTGGAACAGTTAGAAGAGAGCAGTGGTAACCCTCATAGACTGCCTTGGGAAGCTGGAGGGCCTAATATCCACTACTCTTGCTTTCCTTCGCAATCAGAGGGGTTTTTTCAGACACTGGGTGCAGTCGTGGGAGGCAATCCAAATCGGCAAATTGGGTAA 693 0.456 MGRGKVELKRIENKINRQITFTKRRNGLLKKAYELSVLCDAEVGLIIFSNRGKLYEFCSGNSMMKTLEKYQRYSYGALQSTRPTSDTQSSFQDYLRLKAKVELLQRSQRNLLGEDLAQMNTKDLDQLENQLDVALRNIRSTKTHVMLDQLADLQNREKALEKTNKALRKKVASHPISALEQLEESSGNPHRLPWEAGGPNIHYSCFPSQSEGFFQTLGAVVGGNPNRQIG 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g00489 230 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach5g00489 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bach5g00489 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bach5g00489 230 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Bach5g00489 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Bach5g00489 230 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Bach5g00489 230 FunFam MADS-box transcription factor 1 13 87 - -
Bach5g00489 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bach5g00489 230 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Bach5g00489 230 Coils Coil 150 170 - -
Bach5g00489 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bach5g00489 230 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach5g00489 230 Coils Coil 117 144 - -
Bach5g00489 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bach5g00489 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bach5g00489 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g00489 Bach-Chr5 3341193 3343967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g00489 1 230 MADS-box Gene Family AT5G15800 54.008 6.62e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bach5g00489 K-box 1.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g00489 K09264 - nnu:104597886 301.212