Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g00471 ATGGCGGAATCTGTCATTCCAGATGCGATTTCTTTATTGCTCGCCAACCCATCACCGGATTCTTCAACGGAGTTTCCGGAGATTATCGTCCAGGTTCTAGATCTCAAGCAAAGTGGTAACCGATACATGTTTACTGCTAGTGATGGAAACAAGAAGCTAAGAGCAATTCTCCCCTCAAATCAGAATTCTCAGATCATGTCAGGAAATATTCAGAGTCTGAGTCTCATTCGCATCCTTGATTATACTATCAATGATATCCCAAATAAGCCAGAAAAATATGTCATTGTCACAAAATGTGAACCGGTCTGTTCGGCACTTGAAATGGAGATAAAATCTGAGGTCAAGAGTGACGAAACGGGTACTATTTTGAAACCAAAGAAAGAGAATGAAATCAAAAGTGAGGTGAAAAGTGAAGGGACTGACATTATTTTGAAGCCAAAGCAAGAAATGGTTGTTAAATCAGCTGCCCAGATCGTACATGAACAACACGGAAACATGGCTCCTGCTGCACGAATGGCAATGACACGTAGGGTACGTCCTCTTGTTTCCCTGAATCCTTATCAGGGCAATTGGACAATAAAGGTACGTGTTACAAGCAAAGGGAACATGCGCACCTATAAGAACGCCAGAGGGGAAGGTTGTGTATTCAACGTGGAATTAACAGATGAAGATGGCACACAAATCCAAGCAACGATGTTTAATGAAGCTGCAAGGAAATTTTATGATAAGTTTGTACTTGGAAAGGTTTACTACATTTCAAAGGGCACCCTGAAAGTTGCTAATAAGCCGTTCAAAACTGTCCAAAATGATTATGAAATGACATTAAATGAAAATTCGGAGGTGGAAGAGGCAACCAATGAAGCAAGTTTTATTCCAGAAACTAGATTCAACTTTGTTCAGATTGATCAGTTGGGTCCTTATGTCAATAGGAATGATCTTGTGGATGTGATTGGAGTCGTTCAGAATGTGTCTCCATCAATGAGCATTCGTAGGAAGAGTAACAATGAGACTGTCCCTAAACGTGATATTACCATTGCTGATGAAACAAAGAAGACAGTTGTTGTTTCCTTGTGGAATGACCTTGCAACTGGTGTGGGGCAGGAGTTGTTGGATGTTGTTGATAAATCTCCTATAGTTGCAATTAAATCCCTCAAGGTTGGGGATTTTCAAGGGATTTCGCTGTCAGCTATAAGCAAGAGTGCAATTTTAGTCAATCCAGACATACCTGAAGCAAAGAAGCTTAGATGCTGGTTTGATTCTGAAGGCAAAGGTGCTTCAATGGCCTCTGTAGGCTCTGGTTTAAGTCCAGTATCCAAGCATGGAATGAGATCAATGTACTCTGACCGTGTTTCTCTCTCACAATTAACCTCAAACCCAACCTTGGGGGAGGACAAGTCTGCGTTTTTCAGTATTAGAGCATACATAAGTTTTATCAGGCCCGATCAGACAATGTCGTATCGTGCTTGTACAACTTGCAACAAAAAGGTGACAGAGGCCATTGGTTCTGGGTATTGGTGTGAAGGCTGTCAGACAACTGTTGAAAAGTGCAGTTTAAGATACATAATGGTTGTAAAAGTTTCTGATGCAAGTGGTGAAGCTTATGTCTCTGTCTTCAATGAAGAGGCCGAGAAGATTGTTGGGTGCTCTGCTGATGAGCTAGATAACCTGAAGACACAGGAGGGTGAGGATAATCCATACCAACTAAAATTGAAGCAAGTTACTTGGGTTCCTCATCTTTTGCGGGTTAGCGTGTCTCAGAATGAGTATATGAATGAGAAGAGGCAGAGGATAACAGCCCGAGCAGTGGCCCCAGTTGACTTTGCTGCAGAGTCAAGATTTCTCTTGGAAGAGATATCAAAGATGAAAGTTTCTCACTGA 1878 0.4164 MAESVIPDAISLLLANPSPDSSTEFPEIIVQVLDLKQSGNRYMFTASDGNKKLRAILPSNQNSQIMSGNIQSLSLIRILDYTINDIPNKPEKYVIVTKCEPVCSALEMEIKSEVKSDETGTILKPKKENEIKSEVKSEGTDIILKPKQEMVVKSAAQIVHEQHGNMAPAARMAMTRRVRPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDKFVLGKVYYISKGTLKVANKPFKTVQNDYEMTLNENSEVEEATNEASFIPETRFNFVQIDQLGPYVNRNDLVDVIGVVQNVSPSMSIRRKSNNETVPKRDITIADETKKTVVVSLWNDLATGVGQELLDVVDKSPIVAIKSLKVGDFQGISLSAISKSAILVNPDIPEAKKLRCWFDSEGKGASMASVGSGLSPVSKHGMRSMYSDRVSLSQLTSNPTLGEDKSAFFSIRAYISFIRPDQTMSYRACTTCNKKVTEAIGSGYWCEGCQTTVEKCSLRYIMVVKVSDASGEAYVSVFNEEAEKIVGCSADELDNLKTQEGEDNPYQLKLKQVTWVPHLLRVSVSQNEYMNEKRQRITARAVAPVDFAAESRFLLEEISKMKVSH 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g00471 625 CDD RPA1_DBD_A 180 283 - -
Bach5g00471 625 Gene3D - 433 621 IPR012340 -
Bach5g00471 625 Gene3D - 291 431 IPR012340 -
Bach5g00471 625 CDD RPA1_DBD_B 313 419 - -
Bach5g00471 625 NCBIfam replication factor-a protein 1 (rpa1) 20 620 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bach5g00471 625 SUPERFAMILY Nucleic acid-binding proteins 179 287 IPR012340 -
Bach5g00471 625 FunFam Replication protein A subunit 434 621 - -
Bach5g00471 625 SUPERFAMILY Nucleic acid-binding proteins 447 621 IPR012340 -
Bach5g00471 625 Pfam Replication factor-A C terminal domain 468 614 IPR013955 -
Bach5g00471 625 CDD RPA1_DBD_C 455 620 IPR047192 -
Bach5g00471 625 Pfam Replication factor-A protein 1, N-terminal domain 7 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bach5g00471 625 FunFam Replication protein A subunit 4 114 - -
Bach5g00471 625 Gene3D - 6 112 IPR012340 -
Bach5g00471 625 FunFam Replication protein A subunit 177 286 - -
Bach5g00471 625 SUPERFAMILY Nucleic acid-binding proteins 19 108 IPR012340 -
Bach5g00471 625 FunFam Replication protein A subunit 290 429 - -
Bach5g00471 625 Gene3D - 177 286 IPR012340 -
Bach5g00471 625 PANTHER REPLICATION FACTOR A 1, RFA1 191 584 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bach5g00471 625 Pfam Replication protein A OB domain 308 405 IPR031657 -
Bach5g00471 625 SUPERFAMILY Nucleic acid-binding proteins 296 423 IPR012340 -
Bach5g00471 625 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g00471 Bach-Chr5 3209717 3213218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g00471 1 625 Core DNA Replication Machinery Family AT5G08020 67.093 0.0 895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g00471 K07466 - qsa:O6P43_002222 1012.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach5g00471 5 3209717 3213218 Bach5g00471 5 3209717 3213218 ECH