Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g00447 ATGGAACTCACCGAAGAACAGAGAAAACAAATCGAAACGAACCGTCTAGCAGCTATTGCAAAACGAAAGGCTCTGTTGGAATCTCGCGCACAGGAACACCCGTGGGAACTTGTTAAGTGCCGTAAGTTGTCTCACGACGAACTCAATCCCAGATCGATTTACCTCCCAAAAGAACCCCAAATCATCTCGGCCGGACTGGTTCCCTCGAAATCCTTGCCTGATAAATTCCGATTCCTGGTTCGGCTTGAAATATGCTCTCCCGATTCTTTCTCAGCGACGCCATTGCCCCTTCAGGATGTCCCCTTTCCGGGAGGGGGACTGTGCTTGAAGGAACTAAGCGAATCCTTGTCAGATGTAACGCCATCACACTATACTCAAAATAATAGTGGTGGAGAGGCCTCTGTATATAAACTAAGGGACTACCATGCTGTCGTAAAATGTTTGAAGGCTTCCTCGGAGATTGAAGTTGAAGAAATACCATGGGGAACTTTCAATGTTGTTGAGAGGCTTTCACATTCTTTTGTTGCAGGGCGCTGGATACCCTGCAGACCTGAGCACTTGTCTGATGAGGATGTTGATGAGTTAATTGAGAACCTGCCAAGCGTTTTGTTGGATGCATTGTTGCCTTTTCAGTTAGATGGTTTAAGATTTGGTTTGAGAAGGGGCGGCAGGTGTCTTATAGCGGATGAAATGGGTCTTGGGAAAACACTTCAGGCTATTGCTATTGCCGGATGTTTCATGGATGAAGGTTCTATTCTTGTTGTTTGCCCAGCCGTTTTGCGTTTTTCTTGGGCAGAAGAATTGGAGCGTTGGCTTCCCGTCTGCCTGCCATCCGATATACATCTGGTTTTTGGCCATAGAGACAATCCTGTATATTTAACAAGATGTCCTAGAGTTGTTGTTATTTCTTATACCATGCTCCATCGTCTACGGAAAAGCATGCTTGAGCGAGAATGGGCTCTCTTGATTGTTGATGAATCTCATCATGTGCGATGTACGAAGAAAGCCTCAGAAACCGGAGAGATAAAGGCTGTCCTTGACGTGGCTTCAAAGGTCAAGCGCATCGTTCTGCTATCTGGGACACCCTCTTTGTCAAGGCCGTTTGACATTTTTCATCAGATAAATATGTTATGGCCTGGTTTGCTTGGGAAGAGTAAATATGATTTTGCGAAAATTTACTGTGATTTCAAAGTTTTCCGGGGTATTCAAGGGAGATATTTTCAGGATTTTTCAAAGGGCATTCGCTTGGAGGAGTTGAACGTGTTACTAAAGCAAACTGTAATGATAAGGCGTTTAAAGGAGCATGTGTTGCTCCAGTTACCGCCAAAACGCCGGCAAATTATAATGCTGTTGTTGAAGAGATCGGATAGAGTTGCTGCAAAAACTGCAGTAAGGGTGTTGAATAACGATACTTCTGAAAATACCAGTGAAGATGCGACTTCGGAAAGTTTAGATGAATCTGATGAAAAGCTCTCTCTCCAGGAACTTGGAATTGCAAAACTTTCTGGGTTTCGCGAATGGCTTTCCATCCATCCACTCATTGCGGAGCCAGACAGAGCTTCAAAAATGATAATTTTTGCTCATCACCACAAAGTTCTTGATGGAATACAGGAGTTTATATGCGAGAAAAGGATAGACTTTGTTCGTATAGACGGAAATACACCTGCCAAAGATAGGCAGTCAGCTGTAGTGTCATTTCGATCATCACCAGAGGTTAAAATTGCTATAATTGGTATTCTAGCAGCAGGATATGGAGTTGATTTCTCATCAGCACAAAATGTTGTCTTTTTGGAGCTACCCCAATGCCCAAATATGATGCTTCAGGCGGAGGATAGAGCTCACCGGCGGGGGCAAACAAATGCAGTCAATGTATACATCTTCTGTGCAAAGGATACTGTGGATGAGTCCCATTGGAGAAATTTAAACAAAAGTTTGCGTCGTATTTCAACTACAACAGATGGCAAATATGATGCAATGCAAGAAATAGAGGTCCAAGGTGTTTCATATTTAGAAACATCTGTTGAAACTGATACTAGTTATAAAGATCAATCTGCAGCCAGAACTGCGTGCACTGAAACATCCGAACTGGGCATCGAGTTTCTGGATGCATGCTCAGTTTTGGATTTGAAACCTTCCCTGGAAAATCCTCGTAAATCAGCAACTGAATTAAGTTATAAATCTGATCGGCAGATATATTTCGGAAATAATTCTATTCAGACAACTTATGTTATGACTGATACGGTTTCCGGCCTAGAATTAGGCAAGGTTTCTGTTCCGGATGGAAATTTAGACATAGATGTCTCTTATACTGAGGAAGGACATGCTGGGTTTTATGCTCATAAGCTGGATAAGAGTGTAAGAGAGAATGATCAAGTGGCAGATTTTGTGGATGAGAAGACCCACAAGGGCAAAGATCAAATGATAGAGGACAGGAAATTCTCCCCCTCAGTAGAAGCAAATGACAACCTACCTTTGCAGTCAATTGAAGCCGATGAACATTCTTCTGATCAAATTGATGCTTTGAGATTTGAGGTGAGTCCACACACTGGAAGGATCCACTTGTATAGTTGTATCTCGGGTACAGATACAAGACCTAGACCACTTTATGAAAATTTCCGACCAGAGGAACTTGAGCTGCTAGGTTTCCCTTTTGATGATGATAAAAAGAAAGTAGAGTTTAAATCTTTCAAGCACAACCCTGCTTCTAGGCATGCTCTTGTGGAATTTATAAATGAGTGGAAAAAGTTGAGGCCCATTGAGCGTAAGAAGTTAATTGGAAAACCGTTGCAACTTCCCTTGGCTGCTGAATTGTGCTACTTGAGCGAAAGCATTAACCACAACAACCGGGGATTGTTAAATGGTGGAAGCAACCGACGCATGACACCTTTAGTGGAGATTAGCCATCCTCTACCATCAGGTGCTGTTTGGCGTAAGGTTTATCTGCGAAGTGGGCATTGTAAGAAGGAGAAAGAATACACTCAGGGTTGGAGTCTGATAGAAGAACCGTTATGCAAGCTCTGTCAAAAGCCATGCATGGGTAACAATGCCAAGACACCTGAATACTTTGAAGATCTTTTCTGCAATCTTGTTTGCTATGAAGAGTATCGCATAAGAACTAGCAATAGATTCCTCCGCCAGGAACTTTTCCAAATTGAACGAGGTGTGTGCTCAAATTGTCAATTAGACAGTCATAAGCTCGTTGAGCAAATAAGGCCTTTGTCATTGGAAATGCGAAGAGAGTATATAGAGAAAGTAGCCCCAAAAGTGGCAAAGCGGAAGAACCTGCTTGAGAAGCTTGTCAATGATCCAACTGAAGGCAATGCATGGCACGCAGATCACATAATTCCAGTATATAAAGGCGGAGGTGAATGTAGATTAGAGAATATGAGGACTCTTTGCGTGGCCTGCCATTATGACGTTACTGCAGCACAAGCTGCTGAACGACGCAGGGAAAGGGCTAAGGCCAAGAAACTACTAAAAGTTATCATGAGTGACCTGAAAAGTGGTCAAATGGTGGATACCACGGACTCTCATATTAAGGACCATGGGCTTCTTGAGGCGCAAGGAAATGAACTTGTGGATGAGCTTATGATCAAAGACCACAGGCTTCTTGAGTTACAAGGAAATGTACTTAGGATGAGCTCATTCACAAGGTGCCTGGAAGTGCCTATTTTGGAGGTAAAAGTTGGGAACGGAAATAACGGTGGTGCAACCTGGAATAGGTTGTCTGCACTATGTACTAGGGTGACCAATCTGGTGCTCTGGATCAGATATTTACAGCACATATCACTGATTGTACAAGTCGTCCCAACTAGTTAG 3819 0.4305 MELTEEQRKQIETNRLAAIAKRKALLESRAQEHPWELVKCRKLSHDELNPRSIYLPKEPQIISAGLVPSKSLPDKFRFLVRLEICSPDSFSATPLPLQDVPFPGGGLCLKELSESLSDVTPSHYTQNNSGGEASVYKLRDYHAVVKCLKASSEIEVEEIPWGTFNVVERLSHSFVAGRWIPCRPEHLSDEDVDELIENLPSVLLDALLPFQLDGLRFGLRRGGRCLIADEMGLGKTLQAIAIAGCFMDEGSILVVCPAVLRFSWAEELERWLPVCLPSDIHLVFGHRDNPVYLTRCPRVVVISYTMLHRLRKSMLEREWALLIVDESHHVRCTKKASETGEIKAVLDVASKVKRIVLLSGTPSLSRPFDIFHQINMLWPGLLGKSKYDFAKIYCDFKVFRGIQGRYFQDFSKGIRLEELNVLLKQTVMIRRLKEHVLLQLPPKRRQIIMLLLKRSDRVAAKTAVRVLNNDTSENTSEDATSESLDESDEKLSLQELGIAKLSGFREWLSIHPLIAEPDRASKMIIFAHHHKVLDGIQEFICEKRIDFVRIDGNTPAKDRQSAVVSFRSSPEVKIAIIGILAAGYGVDFSSAQNVVFLELPQCPNMMLQAEDRAHRRGQTNAVNVYIFCAKDTVDESHWRNLNKSLRRISTTTDGKYDAMQEIEVQGVSYLETSVETDTSYKDQSAARTACTETSELGIEFLDACSVLDLKPSLENPRKSATELSYKSDRQIYFGNNSIQTTYVMTDTVSGLELGKVSVPDGNLDIDVSYTEEGHAGFYAHKLDKSVRENDQVADFVDEKTHKGKDQMIEDRKFSPSVEANDNLPLQSIEADEHSSDQIDALRFEVSPHTGRIHLYSCISGTDTRPRPLYENFRPEELELLGFPFDDDKKKVEFKSFKHNPASRHALVEFINEWKKLRPIERKKLIGKPLQLPLAAELCYLSESINHNNRGLLNGGSNRRMTPLVEISHPLPSGAVWRKVYLRSGHCKKEKEYTQGWSLIEEPLCKLCQKPCMGNNAKTPEYFEDLFCNLVCYEEYRIRTSNRFLRQELFQIERGVCSNCQLDSHKLVEQIRPLSLEMRREYIEKVAPKVAKRKNLLEKLVNDPTEGNAWHADHIIPVYKGGGECRLENMRTLCVACHYDVTAAQAAERRRERAKAKKLLKVIMSDLKSGQMVDTTDSHIKDHGLLEAQGNELVDELMIKDHRLLELQGNVLRMSSFTRCLEVPILEVKVGNGNNGGATWNRLSALCTRVTNLVLWIRYLQHISLIVQVVPTS 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g00447 1272 Pfam Helicase conserved C-terminal domain 516 617 IPR001650 -
Bach5g00447 1272 CDD HNHc 1101 1141 IPR003615 -
Bach5g00447 1272 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 509 663 IPR001650 -
Bach5g00447 1272 SMART ultradead3 203 399 IPR014001 -
Bach5g00447 1272 Gene3D - 424 695 IPR027417 -
Bach5g00447 1272 Pfam HNH endonuclease 1107 1138 IPR002711 GO:0003676|GO:0004519|GO:0008270
Bach5g00447 1272 SMART helicmild6 534 617 IPR001650 -
Bach5g00447 1272 Gene3D - 185 404 IPR038718 -
Bach5g00447 1272 Pfam SNF2-related domain 225 476 IPR000330 GO:0005524|GO:0140658
Bach5g00447 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 431 IPR027417 -
Bach5g00447 1272 CDD SF2_C_SNF 499 628 - -
Bach5g00447 1272 FunFam SNF2 DNA repair protein, putative 181 430 - -
Bach5g00447 1272 Gene3D - 1032 1163 - -
Bach5g00447 1272 MobiDBLite consensus disorder prediction 469 488 - -
Bach5g00447 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 669 IPR027417 -
Bach5g00447 1272 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1157 - -
Bach5g00447 1272 CDD DEXHc_HARP_SMARCAL1 207 431 - -
Bach5g00447 1272 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 216 380 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g00447 Bach-Chr5 3038698 3056692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g00447 522 635 RAD5 or RAD16-like Gene Family AT1G61140 36.842 3.98e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bach5g00447 SNF2_N 1.7e-24 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g00447 K25861 - pcin:129320183 1595.1