Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g00394 ATGGTGCACGTTTCATTTTACCGCAACTATGGGAAAACCTTTAAGAAGCCTCGCCGCCCATACGAGAAGGAGCGTTTGGATGCTGAGCTGAAGCTTGTGGGGGAGTATGGACTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAGTATGCTTTGAGCCGTATCCGTAATAATGCTAGGATGCTTTTGACCCTTGATGAGAAGAACCCTCGTCGGATCTTTGAAGGTGAGGCTCTTCTTCGGAGGATGTTCCGTTATGGGCTTCTGGATGAAAGCCAGAACAAGCTCGATTATGTCTTGGCTTTGACTGTGGAGAACTTCCTCGAGCGTCGTCTACAAACACTCGTCTTCAAATCGGGGATGGCAAAGTCTATTCACCATGCTAGGGTACTCATCAGGCAGCGGCATATAAGAGTTGGAAGGCAGGTGGTGAACATCCCATCTTTCATGGTCAGGGTTGATTCACAGAAGCACATTGATTTTTCACTTACAAGTCCTCTTGGTGGTGGGCGTCCTGGAAGGGTGAAGAGAAGGAACCTCAGGGCTGCTGCTAAGAAGGCATCTGGTGGAGATGGTGATGAAGAGGATGAAGATTAAATT 597 0.4874 MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRRIFEGEALLRRMFRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRNLRAAAKKASGGDGDEEDED 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g00394 197 Pfam Ribosomal protein S4/S9 N-terminal domain 8 108 IPR001912 GO:0019843
Bach5g00394 197 MobiDBLite consensus disorder prediction 167 197 - -
Bach5g00394 197 NCBIfam 30S ribosomal protein S4 11 166 IPR005710 GO:0003735|GO:0006412|GO:0015935
Bach5g00394 197 Pfam S4 domain 109 152 IPR002942 GO:0003723
Bach5g00394 197 ProSitePatterns Ribosomal protein S4 signature. 107 131 IPR018079 GO:0019843
Bach5g00394 197 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
Bach5g00394 197 CDD S4 109 153 - -
Bach5g00394 197 Gene3D - 108 164 IPR036986 GO:0003723
Bach5g00394 197 FunFam 40S ribosomal protein S9 108 189 - -
Bach5g00394 197 SMART s4_6 109 180 IPR002942 GO:0003723
Bach5g00394 197 SUPERFAMILY Alpha-L RNA-binding motif 12 159 - -
Bach5g00394 197 ProSiteProfiles S4 RNA-binding domain profile. 109 183 - -
Bach5g00394 197 PANTHER 30S 40S RIBOSOMAL PROTEIN 7 183 IPR022801 GO:0003735|GO:0015935|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g00394 Bach-Chr5 2733657 2735078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g00394 1 187 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 92.513 2.08e-126 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g00394 K02997 - qsa:O6P43_022828 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach5g00394 5 2733657 2735078 Bach2g02031 2 27778805 27780676 ECH
Bach5g00394 5 2733657 2735078 Bach5g00394 5 2733657 2735078 ECH