Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g00259 CTGCTACCTCTTATCCTCAAGCAAAACCCTGCTCCTCTCCTTCTCTTGCTCGGAAATAGAGATGTCTATCACAACTATACCTGCACTTAAGACCCTTGCAATGGCAGAATCATGCCTACTCTCTTTGCCCTCACTCTGTTACGGCAAAATCAAATATTCCCATTTCTCGATTCCTTCCAAACCCATTAAGCTCCAAGCCTTTTTCTCCAATTCTTCACTATCTTTATCATCTTTGTCTCTCAGCAGGAAAACCCACCATTCCTCTGTTGTCACATTTGTAGCGCAGACATCGGATTGGGCTCAACAAGGGGAAGACAACACACTCGCTGCTGAAGAAGAAGAAGAAGCAGAGCAAGATGAATCTGCATGGGAAAAACAGGATGGAGCCGAAGCTAGTCTTTCGGATTGGGAGTCTGAGGGTGGAGACGCAGACGCAGGGATTGAGGGTAGCCAGGGCGAAGGAGAGAGCGGTGAAGATGGGGTTTTTGAGGAGAGGGAAGAAGGGGGATTTGTAGAACCACCTCAAGATGCAAAACTATTTGTTGGCAACTTGCCTTATGATGTTGATAGTCAGAAATTGGCCATGCTTCTTGAGCAGGCCGGGACTGTGGAAATTGCCGAGGTAATTTATAATAGACAAACTGATCGAAGTCGTGGGTTCGGATTTGTAACCATGAGTACAGTTGAAGAAGCCGATAATGCTGTCGAGAAGTTCAACGGCTATGATTTAGATGGGAAACTGTTGACTGTTAATAAGGCTGGTCCAAGAGGATCGCGTCCTGAACGCCCGCCTCGTACCTTTGAACCTAGATTCAAAGTCTATGTTGGGAACTTGAGGTGGGATGTTGACAATGCTCGCCTGGAGCAAGTTTTCAGTGAACATGGTAAGGTTGTGAATGCTCGGATTGTGTACGACAGAGAAACTGGTCGTTCTCGTGGTTTTGGCTTTGTCACAATGACCAGCGAGACTGAAATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGTTTGGACGGGAGGACAATAAGAGTGAAAGTTGCCGAGGAAAGACCCAGGCGTAGCTCCTTTTGAGCTGAGTTCATTTTTCGT 1090 0.467 MAESCLLSLPSLCYGKIKYSHFSIPSKPIKLQAFFSNSSLSLSSLSLSRKTHHSSVVTFVAQTSDWAQQGEDNTLAAEEEEEAEQDESAWEKQDGAEASLSDWESEGGDADAGIEGSQGEGESGEDGVFEEREEGGFVEPPQDAKLFVGNLPYDVDSQKLAMLLEQAGTVEIAEVIYNRQTDRSRGFGFVTMSTVEEADNAVEKFNGYDLDGKLLTVNKAGPRGSRPERPPRTFEPRFKVYVGNLRWDVDNARLEQVFSEHGKVVNARIVYDRETGRSRGFGFVTMTSETEMNDAIAALDGQSLDGRTIRVKVAEERPRRSSF 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g00259 323 FunFam 31 kDa ribonucleoprotein, chloroplastic 61 227 - -
Bach5g00259 323 SUPERFAMILY RNA-binding domain, RBD 140 232 IPR035979 GO:0003676
Bach5g00259 323 PANTHER OS02G0815200 PROTEIN 26 319 - -
Bach5g00259 323 Gene3D - 63 226 IPR012677 -
Bach5g00259 323 Gene3D - 227 322 IPR012677 -
Bach5g00259 323 FunFam 31 kDa ribonucleoprotein, chloroplastic 228 322 - -
Bach5g00259 323 MobiDBLite consensus disorder prediction 74 88 - -
Bach5g00259 323 MobiDBLite consensus disorder prediction 72 143 - -
Bach5g00259 323 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 144 222 IPR000504 GO:0003723
Bach5g00259 323 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 240 310 IPR000504 GO:0003723
Bach5g00259 323 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 146 215 IPR000504 GO:0003723
Bach5g00259 323 CDD RRM2_NsCP33_like 239 314 - -
Bach5g00259 323 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 238 316 IPR000504 GO:0003723
Bach5g00259 323 SMART rrm1_1 145 218 IPR000504 GO:0003723
Bach5g00259 323 SMART rrm1_1 239 312 IPR000504 GO:0003723
Bach5g00259 323 SUPERFAMILY RNA-binding domain, RBD 230 321 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g00259 Bach-Chr5 1809879 1811817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g00259 102 320 Eukaryotic Initiation Factors Gene Family AT3G16380 32.751 1.44e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g00259 - - qsa:O6P43_030799 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach5g00259 5 1809879 1811817 Bach2g02201 2 28887107 28889318 BWGD
Bach5g00259 5 1809879 1811817 Bach2g02201 2 28887107 28889318 ECH
Bach5g00259 5 1809879 1811817 Bach5g00259 5 1809879 1811817 ECH