Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g00244 ATGACAAGCCACTCTCTCCATCTGCTCTTTCTGCTCTTCTCTCTTCTCACACCAACCCTCATTTCCTCTTCAGCTGTTCAGGACCCAGAATTGGTTGTCCGAGAGGTAAACAGGAAAATCAATGCTTCCATTGCTAGGAGGAACTTGGGGTACCTTTCATGTGGGAGTGGTAACCCCATTGATGATTGCTGGAGGTGTGACCCCAATTGGGAGAAGAACCGCCAGAGACTAGCTGACTGTGCAATTGGATTTGGGAAGAATGCCATTGGAGGGAAAAATGGTCAAATTTACGTGGTGACTGACTCCGGCGACGATGATCCAGTGAACCCCAAGCCGGGGACTATCCGATATGCAGCGATTCAAGATGAGCCATTGTGGATCATATTTGCTAGAGACATGGTGATTCAGTTAAAGGAAGAGCTCATCATGAACTCGTTCAAGACCATTGATGGCAGAGGAGCAAGTGTGCACATTGCCGGTGGTCCATGCATTACCATACAGTATGTGACTAATATTATAATCCACGGTATAAACATACACGACTGTAAGCAAGGAGGGAATGCTATGGTGAGGGATTCCCCACGGCATTACGGGTGGAGAACACTATCAGACGGTGATGGCGTGTCCATCTTTGGAGGAAGCCACATATGGGTGGACCATTGCTCCTTGTCCAATTGCAAGGACGGCTTGATTGACGCCATTCATGGGTCCACAGCCATTACACTCTCCAACAATTACATGACACACCATGATAAGGTCATGCTGCTGGGTCACAGCGACTCCTATACCCAAGACAAAAACATGCAAGTGACAATAGCTTTTAACCACTTCGGAGAAGGACTTGTTCAGAGGATGCCAAGATGTAGGCTGGGATATTTCCATGTGGTGAACAATGACTACACCCATTGGGAAATGTATGCCCTTGGAGGAAGTGCAAACCCAACCATCAATAGCCAAGGCAACAGATTTGTCGCACCTGATGAAAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCGGAGAGTGAATGGAAGAACTGGAACTGGAGGTCAGAAGGGGATTTGTTGGTAAACGGTGCGTTTTTCACTGCCTCGGGTGCTGGAGCATCTTCTAGCTATGCAAGGGCTTCTAGCCTCAGTGCTAGGCCATCTTCGCTTGTCGGTTCGATAACAAGCACTGCCGGTGCCCTTGGCTGTAAGAAAGGCTCTCGTTGCTGATTACGACCGCTGAACGAACCTCGCTATTAATTCCAAATAGGAAGAGAAAAACAAAAATATTAGAAAGAAAACGGAGGGCAGTGGAAAAACAAAAAAAAAAGTCTGGTCAATTTCTGGGATTTGCTTTCTCTCCATTCTTTTCTTTTGATTGTTTTCTACTATTTGGTTCTTTTTGTTTTTGTTTTTCTATGAATTTTACTTCAGTCCATGATTACAACCTCTGGCCTGTTACT 1454 0.4601 MTSHSLHLLFLLFSLLTPTLISSSAVQDPELVVREVNRKINASIARRNLGYLSCGSGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGQIYVVTDSGDDDPVNPKPGTIRYAAIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAMVRDSPRHYGWRTLSDGDGVSIFGGSHIWVDHCSLSNCKDGLIDAIHGSTAITLSNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYALGGSANPTINSQGNRFVAPDERFSKEVTKHEDAPESEWKNWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITSTAGALGCKKGSRC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g00244 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Bach5g00244 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Bach5g00244 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Bach5g00244 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Bach5g00244 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Bach5g00244 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Bach5g00244 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Bach5g00244 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Bach5g00244 406 PANTHER PECTATE LYASE 18-RELATED 24 404 IPR045032 GO:0030570
Bach5g00244 406 SMART amb_all 132 329 IPR002022 -
Bach5g00244 406 SUPERFAMILY Pectin lyase-like 41 400 IPR011050 -
Bach5g00244 406 Pfam Pectate lyase 141 323 IPR002022 -
Bach5g00244 406 Gene3D - 57 399 IPR012334 -
Bach5g00244 406 FunFam Pectate lyase 57 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g00244 Bach-Chr5 1725419 1727361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g00244 9 406 Polysaccharide Lyase AT5G63180 81.250 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g00244 K01728 - gmx:100101868 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach5g00244 5 1725419 1727361 Bach2g02212 2 28936800 28938782 BWGD
Bach5g00244 5 1725419 1727361 Bach2g02212 2 28936800 28938782 ECH
Bach2g02212 2 28936800 28938782 Bach5g00244 5 1725419 1727361 ECH
Bach5g00244 5 1725419 1727361 Bach5g00244 5 1725419 1727361 ECH