Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g00243 ATGGATGGGCGGCGGCATTCAGTTGATATTTCTATTTCTAACATTCTTGTAGCATTGAGGAGAGTGAGGTCATTGAGGGATCCAACAACTAATTCTATGAGCAAACTCGCTTCTTTAATTGATAATGTTCACTGGGAAAACAGTTCGGGTAACGGGATTTCTCTGCGGTTCTTGGGTGCTTCTCGTACTTGTGATTCTGATGATAATGTCACTTTAAGATCAAGAAATATAGGTGTAAAGGGATTAAGAGAGCAGGATGGTACTGATTTTGAATTTAATTCTGGCCTGTTGAACTCTAGGCTGAAACCTTTTGGGATCACTTGTCATGAAAGGCAACGGGATGATATACATGTTTACTCTAATCAGGAAGGCGTTTCAGGAAATAAGTCACCAAGTGAAAGTTGCTGTAGTAACCGTAGGGGTCAGGGGTTGGATTTGGCATGCATAATGCTTCCCAGTGATAATTTAAATGATGGAGATTCATGTTATGAAGCAACTGCTGGATCATCACAACTAGGGAGAACTGAGCATTTGAAGTTGACTAGAAAGTCTCTATGCAAAAATCAAGGGAAACCATCTGAGCACATCGATGAGATTGATCCTCATGGACATAGAAGCATGAACCACATTTCTGGTGAACTTGGTGAAAATTTGGAAACTCCTAGAAGTTTAACTTTGAAGTTCAAGCCAAAATTGTTTAGCGATTTGGTGGGACAAAATGTCGTAGCTAGGTCTCTTTTGGGCGCTATCTCTATGGGAAGGATAATGTCATTTTATCTCTTCCATGGTCCCCGTGGTACAGGCAAGACCTCTGCCTCCAGGATTTTTGCTGCTGCACTGAATTGCCTCTCCCTTGAGGAGCAAAAGCCATGTGGTCTATGCAAAGAATGTATTTTATTCTTTTCTGGAAGAAGTAAAGATGTTAAGCAAGTAGATTCTGTGAGAATCAATCGAACAGACAAGCTTAAGTCCCTTGTTAAGAATGCTAGCATTCCCCCAGTTTCCTCACGTTTTAAGGTTTTCATTATTGATGATTGCCAGTTGTTGCATGGGGAAACATGGGCAAGTCTCTTGGATATTCTAGAGAATCTATCTCAGCATGTAGTTTTTTTGATGATCACTCCTGATTTAGGTAAGCTTCCTCCTAGTGCAATTTCCCGGGCCCAGAAGTATCACTTTCCAAAGATAAAAGATACTGACATTGCAAGCAGATTGGAGCAAATTTGTGCCCAAGAATGTCTCGATTTTGAACAGGCTGCTTTGGACTTTATTGCTGCTAAATCCCATGGGTCACTTAGGGATGCAGAAATGATGCTTGATCAGCTGAGTTTGCTTGGTAAAAAAGTCACAATTTCCTTAGTCTACGAGCTTACTGGGGTCGTTTCTGATGATGAATTGCTTCATTTGCTGGATCTGGCATTGTCATCTGACACTTCAAATACAGTCATAAGAGCTCGGGAGCTGATGAGATCAAGGATAGATCCTTTACAACTTATGTCCCAGCTGTCAAATCTCATTATGGACATTCTTGCAGGTAAAGGTCAAGATGGTAGTTCTGAAGCCAGAAGAAGGTTTTCTAGTAGACATCAATCCAAAACAGATATGCAGAAACTAAGTCATGCATTGAGATTACTTTCTGAAACTGAGAAGCAATTGAAAAATTCAAAGAATCAAACAACGTGGTTTACGGTAGCTCTCCTCCAGCTAAGTTCTGCTGAATATTCTTCTGTGGATGTAAATGATGCAAAGTTGTGTTTGAGAGATGCAGTTTGTTCTTGCATGGATACAGGTGCTGATTTTAGCTGTACATCATCTAAAGGGGAGAGCTTAAAGCATCTTGCTACAGGCCTGTGTGACGACAAGTCGTTTAGACTAGGAGTTCAAGAGGAATACAAAGGAACATTGGATTCCATATGGTATAAAGCTACAGGGTTATGTAAATCTAATGGGCTCAAGACATTTCTCAGGAAACGGGGGAAGCTGTCTTCGCTTTGTGTTAGTCACGATCTTGCAATTGCTGAGTTGGAGTTCCACCATCGTGATTATGTCTCTAAAGCTGAGAAGTCATGGAAACTGGTTGCAAATTGCCTGCAATTCATATTGGATTGCAACATTGAGCTTAGGATCAATCTTATATCTAGTAATTCTGATTCGAAGTATGCCAAATCTAAGAGATCATCCTTCAGTTTTTTTAGTTGTCCCTGCAGAATAAATCAGAAATCATTCTCGTCAAATGAAAGAGGAAGTGACACGGACTATGCTGATTACACCTCTGAAAAACCCACGATGAAGGATAGAACTCAAACTTATTCCTCTGATTGTGTATATCAGGTGCCACCCCCTGAGTGCTATGACAGGATGGACGTTGAAACAACTTTGAGAAATGGTGAATGGAATCTGTTAAGTTCGGGGAAAAAATTGTTGACTAGGTTATGTCAAGAGTCTAGAAAGACATGGAATGCAGGGCTTCAGCAACACAAATCGCATGTAGTGGGTTGGGTTCTTCCCTGTGCCACTGCTAAGTAA 2526 0.4078 MDGRRHSVDISISNILVALRRVRSLRDPTTNSMSKLASLIDNVHWENSSGNGISLRFLGASRTCDSDDNVTLRSRNIGVKGLREQDGTDFEFNSGLLNSRLKPFGITCHERQRDDIHVYSNQEGVSGNKSPSESCCSNRRGQGLDLACIMLPSDNLNDGDSCYEATAGSSQLGRTEHLKLTRKSLCKNQGKPSEHIDEIDPHGHRSMNHISGELGENLETPRSLTLKFKPKLFSDLVGQNVVARSLLGAISMGRIMSFYLFHGPRGTGKTSASRIFAAALNCLSLEEQKPCGLCKECILFFSGRSKDVKQVDSVRINRTDKLKSLVKNASIPPVSSRFKVFIIDDCQLLHGETWASLLDILENLSQHVVFLMITPDLGKLPPSAISRAQKYHFPKIKDTDIASRLEQICAQECLDFEQAALDFIAAKSHGSLRDAEMMLDQLSLLGKKVTISLVYELTGVVSDDELLHLLDLALSSDTSNTVIRARELMRSRIDPLQLMSQLSNLIMDILAGKGQDGSSEARRRFSSRHQSKTDMQKLSHALRLLSETEKQLKNSKNQTTWFTVALLQLSSAEYSSVDVNDAKLCLRDAVCSCMDTGADFSCTSSKGESLKHLATGLCDDKSFRLGVQEEYKGTLDSIWYKATGLCKSNGLKTFLRKRGKLSSLCVSHDLAIAELEFHHRDYVSKAEKSWKLVANCLQFILDCNIELRINLISSNSDSKYAKSKRSSFSFFSCPCRINQKSFSSNERGSDTDYADYTSEKPTMKDRTQTYSSDCVYQVPPPECYDRMDVETTLRNGEWNLLSSGKKLLTRLCQESRKTWNAGLQQHKSHVVGWVLPCATAK 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g00243 841 CDD HLD_clamp_pol_III_gamma_tau 396 459 IPR045085 -
Bach5g00243 841 NCBIfam DNA polymerase III subunit gamma/tau 223 569 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Bach5g00243 841 Gene3D - 397 459 - -
Bach5g00243 841 Coils Coil 538 558 - -
Bach5g00243 841 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 226 657 - -
Bach5g00243 841 SUPERFAMILY post-AAA+ oligomerization domain-like 466 569 IPR008921 GO:0003677|GO:0006260
Bach5g00243 841 Gene3D - 216 394 IPR027417 -
Bach5g00243 841 Gene3D - 460 572 - -
Bach5g00243 841 Pfam DNA polymerase III, delta subunit 239 396 - -
Bach5g00243 841 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 445 IPR027417 -
Bach5g00243 841 FunFam DNA polymerase III subunit gamma/tau 397 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g00243 Bach-Chr5 1715851 1718870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g00243 218 558 Core DNA Replication Machinery Family AT1G21690 23.343 6.44e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g00243 - - pcin:129308301 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach5g00243 5 1715851 1718870 Bach2g02213 2 28948396 28952038 BWGD
Bach5g00243 5 1715851 1718870 Bach5g00243 5 1715851 1718870 ECH