Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g00172 ATGGCAGCCTTTTCATATCAGTATCATCATCCTTTACTTGTTGACCCAGCACTCTTGTCCAATACTTTTAAGGTCTCACTCTTCTCAGAGCATGTGCATACAAACGCAGCTCCTCCTTCTCAATTTTACCCATACCACCAGTCTCTTCTGGAGCCATCTTTTAATGTTACAAATCATGAAACTAGCTGTGTTGATCAAAGCTCCAAGGTTACTATAAGTGACAACGAGCCTTCAGTGGCCAAAAACCACAGTCCTGAAACCTCCATGGTAGTGGACAAGCTTGAAACTGGGGAGCACGTTACCCAGAAGGTGACTCCTATGGTAAAGAAAAGGAGAAACAGAAACGGGACTTCTCCCCAGTTGTCTAAGGACGCAACAGAAGGGAGAAACAAGAAACAGAAGAGGAGCAATGGAGGAGAGAAAGAAGAAAACAAGGCAAAAGCAGAGAAGAAAGGTCCCGAGGAGCCACCAACAGGTTATATCCACGTTAGAGCTAGAAGGGGTCAGGCTACTGATAGCCACAGCTTAGCTGAAAGGGTAAGAAGAGAAAAAATAAGTGAGAGGATGAAGATACTGCAGCTACTAGTGCCGGGTTGTGACAAGGTAACCGGAAAAGCCCTCATGTTGGATGAAATAATCAATTATGTTCAGTCATTACAAAATCAAGTAGAGTTTCTCTCAATGAAGCTTGCTTCTGTAGATCCCATGTTCTATGATTTCTCAATGGACCTAGACAACCTTATGGTTAGACCAGAGAAATTGAATAGCATGGCGTCAACACCTTCTATGCCACAATGCAGCCCAAACCAGGTCACAACTTTTGCAGATACAACCACCCTTACCACCACCACTAGCTTTCCCACTGCTAATGACTATCTTTTGGACAATTCTGCTTCGATTTTACTTCAAGCACCGAGGTCAAATGTTTTCACTCAGGATTGTGGTAATCAGTTCTGGGATGTTGAAGACCAGAGACAGAAGCTCCTTAATTCATATGGGTTCAGCAACAACCTGTGTTCCTTTCAATAA 1029 0.4344 MAAFSYQYHHPLLVDPALLSNTFKVSLFSEHVHTNAAPPSQFYPYHQSLLEPSFNVTNHETSCVDQSSKVTISDNEPSVAKNHSPETSMVVDKLETGEHVTQKVTPMVKKRRNRNGTSPQLSKDATEGRNKKQKRSNGGEKEENKAKAEKKGPEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKILQLLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVDPMFYDFSMDLDNLMVRPEKLNSMASTPSMPQCSPNQVTTFADTTTLTTTTSFPTANDYLLDNSASILLQAPRSNVFTQDCGNQFWDVEDQRQKLLNSYGFSNNLCSFQ 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g00172 342 SMART finulus 175 225 IPR011598 GO:0046983
Bach5g00172 342 FunFam Basic helix-loop-helix transcription factor 166 238 - -
Bach5g00172 342 Pfam Helix-loop-helix DNA-binding domain 173 220 IPR011598 GO:0046983
Bach5g00172 342 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 75 266 IPR024097 GO:0006355
Bach5g00172 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 219 IPR011598 GO:0046983
Bach5g00172 342 MobiDBLite consensus disorder prediction 67 177 - -
Bach5g00172 342 Gene3D - 166 237 IPR036638 GO:0046983
Bach5g00172 342 MobiDBLite consensus disorder prediction 125 177 - -
Bach5g00172 342 MobiDBLite consensus disorder prediction 67 85 - -
Bach5g00172 342 CDD bHLH_AtBPE_like 159 244 - -
Bach5g00172 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 235 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g00172 Bach-Chr5 1222482 1224223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g00172 129 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 60.116 2.13e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bach5g00172 HLH 7.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g00172 - - gmx:100806696 411.379