LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach5g00159	TCTTCTTCTCTTTCTCTCAAAACTCAAACTGTTCTTCTGTTGTCTGAATATCCCTACAAACCAGAGGGCGACCGGCGAGCGCAATCTCGTCGGAAAATCGCTCTACGTTTGCTGGAATCTCCGTTTTATCCGATTTGAGCTGCGAACTTTAATTTTTTTATTCTTATTTTTTTTTTTCATGTAAGAGTGTTAACAAGGAAAGGAAATATTCTGTGTTTATGGAAACATTCCTCCATTTATTTCCACCTTTTCTTCTGTGGTGAGCAATAGCCGGTAAAGCAATGCAGAGAAAAGAAAGCAGATTTTTGCCGCGAAGTTGAAAATATTCTTAGATCCCCATTACTCAATTCTTCATGTCATAGACCTCCCACAGAATTCATCTTTTCTCTTTCTTCTCTCAAGTGTTCAGATGAGCAGCTTGTTGAATTTTGAGGATAAACAGAGAAAGAAAGAGTTTTTGATTTTGTGTGTGCCAACGAGATTGTGTTAAAGTTTTGAAGATGATGAGAAATAGAGTCTGACATAGCCGGCAACTGAGGACCTCTCCACTAATTGTTCTCTTTCCAGAGTTTCTGCTTCTGAACTCTGAGCTGCGGGATGCCTTTTGAAATAATGGATCAAGGGGGCGAATCTGCCTCATCTCATTTTTCTGAAGACGTCAGATCTGAGAGGAATGTTGGATTGCAGAAGCCAAAACCCAACCATGATCATTACCAACAAGGTAAGAATGGAATGGTGGCATCACATGGTAGCATTTTGAATGCTTCATCACCCCAAGAAATGAGTGCGAAGACAGGCTTGCCAATTTCGCAGATGGTTCCATCTGGAAAAATTACAGAGAAGCTACATTTTGATGGAGAGGAAGGCATTATGGATATGTTGAAATCTTCGAAGGAATCCCTGAATCATCATCCCGGATCATTGTCTAATGTCTATAAACAGCCAGGATCTAGCTCATATGGTTTAATTGGAAGCAAGATTGTCACTGATGCTGGCTCTCGTGAAAGTAGTCTATTCTCAAGCTCACTATCTGAGATATTTAGCCAAAAGTTGAGGTTAATGGGAAATAATGTTCTGTCTCATCAGCCCATTACATTTGGTTCCCCTTCTGAGAAAGAACCTTTTGTGCCTCTTGAAGAGATTGAGGCTGAGACTATTGGGAATCTCCTTCCTGATGAGGATGATCTCTTTTCTGGTGTCATTGATAATTTAGGACACAATGCTCGTGCCCGAGCAAGTGATGACTTGGAAGATTTTGATTTGTTTAGTAGTGGTGGAGGCATGGAGCTGGAAGGGGAAGAACATCTAAGTTCAGCAAAAAGATTTGTTGGTCTGGATGGAGATTCTGTTTATTTTGGAGGCTCTAAAGGAAAGCTCCCTTTTGGTGGACAGCCTTCTAGAACGCTTTTTGTTAGAAATATCAATAGCAATGTTGAAGATTCTGAATTAAAGGCTCTCTTCGAGCAATATGGAGATATCCGAACCACTTATACGGCTTGTAAGCATCGTGGTTTTGTTATGATTTCTTATTATGATCTAAGGGCTGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCATTGAGGTCTAGGAAACTTGACATACATTATTCAATTCCAAAGGTCAATGCTCCAGAGAAGGATATTAGCAATGGTACACTGGTGCTATCTGGTCTTGATTCTTCTGTGTCCAATGATGAGCTTCATCAGATTTTTAGATTTTATGGAGAAGTTAAAGAAATCTATGAAGCTCCAGAAGTGAATCATCATAAATTTATAGAATTTTATGATGTGCGAGCGGCTGAAGCTGCTCTTCATGCATTGAATGGGAGTGACATTGCTGGGAAGCAGATCAAACTTGAACCAGGCCATCCAAGGGGTGTAACATGCCTGATGCAGCAGTTTCAGAAAGGGCAAGATGAACCTGAGTTTGGTCAAAGTATTTGTGACAACTTGTCATTAAGACAGAAGGGTATGGTTGTGTTTGCTTCAAGTTATTTTTTTCCTCTAGGAAACAAATGTTGTTCTTTCTCTCACCCGAAATCATTTACAGCAGCAATGTCCTCCGGAGTTGGCTGCTTAGATAATGGATCCAATCAGGGATTTCAATCTGCAATAGGGCTTCCAATGAATGCATTTATTGATAATGCATTTTCTCATGGAAATTCTGGCATTCCCAACACAGTGAATAGGGCATCTGCTGGAAAAGCATCTGGTGTTTGTGAATCCAGTAACTTAGTTGATGCAATGAAATTTGCATGTGTTCCAAGATTCCATCCCCATTCCTTCCCTGAATATCATGATGGTCTAGCCAATGGCAGTCCTTACAACTTTCCAAGCACCATTAGCAGTATGGCTGGCAACATTAGTACTGGTGTGACTGAAGGTTCTGATAGCAGGCACATTCAAGGGATGGGTTCAATTGGGAACCTCATGGAATTTAATGGAGGAGGAAATGGAAGTTGCCCACGTGCTGGACCTTATAACATGTGGAACAGCTCCAATCTGCATCAGCAATCTCCATCAAGTCCAATGCTTTGGCAGAAAGCACCATCATTAGCTAATGGTGCTTGTGCTCCTAACCTTCCACAAATGCCCAACTTTCCTAGAACGCCCCCTCATATGTTGAGACCATCACATATAGAGCACCATGTTGGATCTGCTCCAGTTGTTACAGCTTCCCCCTGGGACAGGCAATTTTCTTATTTAGGAGAGTCTCCTGAAGCTTCTAGTTTTCACTTGGGATCCTTAGGGAGTACAGGCTTTCCTCGTTCATGGCAATTGCATCCCCCAGATATTTTTTCTCCCAACATGCTTTCTCATGTTGTTGGAAATGGCACAGAATTTATGCCCAATGCTGGGCAGAGCCCTCCTAAGCCATTATCACATGCTTTCCCTGGGAGACATACCATGACTTCGATGTCAAAATTTGATTCTACCAATGAGCGAATGAGAAACCTGTATCACCGAAGAAGTGAAGCAAATAATAACAGTGCGGACAAAAAGCAATATGAACTAGACCTTGGCAGCATACTACGTGGGGAAGATAACCGAACAACGCTTATGATAAAGAATATTCCTAACAAATGCTTTACATTTAATGATTTTACACCAGGTATACTTCAAAGATGCTTCTTGCTGCCATCGATGAGCACTGCCGGGGAACTTACGATTTTCTGTATTTACCAATTGACTTCAAGGCAAAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAGATTATTCCATTTCATCAGGCATTCAATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTAGCTTCACTGGCATATGCCCGCATTCAGGGGAAATCTGCTCTCATTGCCCATTTCCAGAATTCAAGCTTGATGAATGAAGATAAACGTTGCCGCCCTATTCTTTTCCATACAGATGGCCCAAATGCTGGCGATCCGGAACCCTTCCCAATGGGTACCAATATTAGATTGAGACCTGGAAAAAGTCGCATTAGTGGTAATGAGGAAAATCGCAGCCAAGGGGGTCCTTCAACTTTGGCAAGTGGTGAGGAGTCGACTAATGGAATGGATTCTTCATTGAGCTCTTCAAGATACTCTGACTAA	3618	0.4138	MPFEIMDQGGESASSHFSEDVRSERNVGLQKPKPNHDHYQQGKNGMVASHGSILNASSPQEMSAKTGLPISQMVPSGKITEKLHFDGEEGIMDMLKSSKESLNHHPGSLSNVYKQPGSSSYGLIGSKIVTDAGSRESSLFSSSLSEIFSQKLRLMGNNVLSHQPITFGSPSEKEPFVPLEEIEAETIGNLLPDEDDLFSGVIDNLGHNARARASDDLEDFDLFSSGGGMELEGEEHLSSAKRFVGLDGDSVYFGGSKGKLPFGGQPSRTLFVRNINSNVEDSELKALFEQYGDIRTTYTACKHRGFVMISYYDLRAAQNAMKALQNRSLRSRKLDIHYSIPKVNAPEKDISNGTLVLSGLDSSVSNDELHQIFRFYGEVKEIYEAPEVNHHKFIEFYDVRAAEAALHALNGSDIAGKQIKLEPGHPRGVTCLMQQFQKGQDEPEFGQSICDNLSLRQKGMVVFASSYFFPLGNKCCSFSHPKSFTAAMSSGVGCLDNGSNQGFQSAIGLPMNAFIDNAFSHGNSGIPNTVNRASAGKASGVCESSNLVDAMKFACVPRFHPHSFPEYHDGLANGSPYNFPSTISSMAGNISTGVTEGSDSRHIQGMGSIGNLMEFNGGGNGSCPRAGPYNMWNSSNLHQQSPSSPMLWQKAPSLANGACAPNLPQMPNFPRTPPHMLRPSHIEHHVGSAPVVTASPWDRQFSYLGESPEASSFHLGSLGSTGFPRSWQLHPPDIFSPNMLSHVVGNGTEFMPNAGQSPPKPLSHAFPGRHTMTSMSKFDSTNERMRNLYHRRSEANNNSADKKQYELDLGSILRGEDNRTTLMIKNIPNKCFTFNDFTPGILQRCFLLPSMSTAGELTIFCIYQLTSRQNKCNVGYAFINMIDPGQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNIRLRPGKSRISGNEENRSQGGPSTLASGEESTNGMDSSLSSSRYSD	1006

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach5g00159	1006	SMART	rrm1_1	354	422	IPR000504	GO:0003723
	Bach5g00159	1006	SMART	rrm1_1	269	337	IPR000504	GO:0003723
	Bach5g00159	1006	MobiDBLite	consensus disorder prediction	17	38	-	-
	Bach5g00159	1006	MobiDBLite	consensus disorder prediction	941	1006	-	-
	Bach5g00159	1006	SUPERFAMILY	RNA-binding domain, RBD	821	916	IPR035979	GO:0003676
	Bach5g00159	1006	Gene3D	-	257	350	IPR012677	-
	Bach5g00159	1006	FunFam	Protein MEI2-like 1	352	446	-	-
	Bach5g00159	1006	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	355	420	IPR000504	GO:0003723
	Bach5g00159	1006	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	270	334	IPR000504	GO:0003723
	Bach5g00159	1006	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	16	1001	-	-
	Bach5g00159	1006	MobiDBLite	consensus disorder prediction	1	44	-	-
	Bach5g00159	1006	Gene3D	-	351	445	IPR012677	-
	Bach5g00159	1006	FunFam	MEI2-like protein 5 isoform 2	257	351	-	-
	Bach5g00159	1006	Pfam	RNA recognition motif 2	819	926	IPR007201	-
	Bach5g00159	1006	CDD	RRM1_MEI2_like	267	342	IPR034453	-
	Bach5g00159	1006	SUPERFAMILY	RNA-binding domain, RBD	266	427	IPR035979	GO:0003676
	Bach5g00159	1006	MobiDBLite	consensus disorder prediction	972	1006	-	-
	Bach5g00159	1006	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	353	426	IPR000504	GO:0003723
	Bach5g00159	1006	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	268	341	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach5g00159	Bach-Chr5	1118775	1126014	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach5g00159	266	419	Eukaryotic Initiation Factors Gene Family	AT1G71770	26.220	2.59e-08	56.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach5g00159	-		-	gmx:100797893	1296.18