LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach5g00056	GTCCACCTGTCTGTCTAGTGGTGAACGTGAATGGAATTGGAAAGCTCCGAATCCATATGCTCGCCAATTTCTCACATTTTAATTCAACGTCCTCGCTCCCTATTAATTTGAGGATTATTGTGACCACTTACGAATGAATGTCTGAGGTTTTCTGATGGAGTTGAACGCAAAATCTCCCTCGCAGTGGGACTGGGAACACCTGTACTTAAATGCAAAAGCAGCCGAAACTCCCAGGTCACCACAATTAGACTGGAGTTCTGAAACAGATCGAGAAATGAATGTCAGGCTGTTCTATTCTTGTTGAGGTAGTGGTTGTTCAGGGTCTGAGATAATGCATGCTTCTTCATCAAGGAGTTCAAAATCAGCTTCCATCAATTCTTCATCAAATGAGGAAAGCAAAACATTAATATTCAACCTTGAAGGTTCCCAAGAAGGTTCTAGTAGTAAGAATGAACTGTCAAAAGACGAGCCTATTGAAACTTCTCCTGCACATGAGCCTTCTTCTGTATCTGGTGAGCCTTTGCTCAGTCTAAAGCTTGGTAAAAGGCTGTACTTTGAAGATGTTTGCCCTGGGAGTGATTCCAAGAACCTGTCCTTCTCTGGGGTTCTGTTGCCGTCTTTGAGTACTGGAAAGAAAGGCAAGTTCAACAGTAAGAGCCCACATCCTCCACGCTGCCAGGTTGAGGGCTGTAACCTTGACCTCACATCAGCAAAAGATTATAATCGTAAACATAGAGTTTGTGAAAGTCATTCCAAATCCCCCAAGGTACTTGTAAATGGTCTGGAACATCATTTTTGCCAGCAATGTAGCAGGTTCCATAGTCTGCCAGAGTTTGATGAGAAAAAGAGAAGCTGCCGACGACGTCTTTCTGATCACAATGCAAGGCGTCGTAAGCCTCATCCTGAAGTAGTCCAGCTAAATCCCTCAGCTTATTCTTTGTCAGAAGATGGTGTTCTTTTTGAATTTTGGTTGACCTTTACTGTTTCTTATTGTTGCATATCCTGCATTAATGAAGAATTACTAATATACATCTTTGTCAGAAGATGGTATTCTTGTTGCTTGTTGATAGGAGGAAAACGGTGGCTTATGGATTGCCAAATATCTGGCCTTAATTCTTATATGTAATGGCTTGTTTAGACAACTTTACAATGAACACGTTTATTGAGATGTATATTTCCTAATCTGTTGTTAGAAGTTAAAATTTAGAATATAATCTGAAATTTAGTTACAAGATAGACGGAGGTCTTAATTGAGTTGCAGTATATCCTGATAAATAACATTTAATATCCTCAACCTAATTTGTAAACATGACATGCAACATATGGAAAGTTTTGTTTCGCATGTGGGAAGTAAACTGACAACAGTGTCAGTGTGCTAGTATATGATGTCACAGTAGTGCAGAAAAAAG	1409	0.3989	MHASSSRSSKSASINSSSNEESKTLIFNLEGSQEGSSSKNELSKDEPIETSPAHEPSSVSGEPLLSLKLGKRLYFEDVCPGSDSKNLSFSGVLLPSLSTGKKGKFNSKSPHPPRCQVEGCNLDLTSAKDYNRKHRVCESHSKSPKVLVNGLEHHFCQQCSRFHSLPEFDEKKRSCRRRLSDHNARRRKPHPEVVQLNPSAYSLSEDGVLFEFWLTFTVSYCCISCINEELLIYIFVRRWYSCCLLIGGKRWLMDCQISGLNSYM	264

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bach5g00056	264	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	7	201	IPR044817	GO:0003677
Bach5g00056	264	MobiDBLite	consensus disorder prediction	1	38	-	-
Bach5g00056	264	ProSiteProfiles	Zinc finger SBP-type profile.	112	189	IPR004333	GO:0003677
Bach5g00056	264	FunFam	Squamosa promoter-binding-like protein 14	106	176	-	-
Bach5g00056	264	SUPERFAMILY	SBT domain	113	194	IPR036893	GO:0003677\|GO:0005634
Bach5g00056	264	Pfam	SBP domain	115	188	IPR004333	GO:0003677
Bach5g00056	264	MobiDBLite	consensus disorder prediction	1	62	-	-
Bach5g00056	264	Gene3D	-	106	176	IPR036893	GO:0003677\|GO:0005634

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach5g00056	Bach-Chr5	417996	424236	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach5g00056	32	191	SBP-box Gene Family	AT5G43270	59.006	1.88e-52	174

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SBP	Bach5g00056		SBP	3.1e-30	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach5g00056	-		-	lja:Lj0g3v0057709.3	277.33

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