Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach5g00011 ATGGCATTTCCAATAATCTCATTGATGTTGCTGCTTCTTGCCCCGTCCTTCATTTTCTCTTCTCCAGTTGCAGATCCACGATCAGTAGTGGAAGAAGTACACAGCATCTATAATGCCTCGAGAAGAAATCTGGGGTTTCTTTCTTGTGGAACAGGTAACCCCATCGATGATTGTTGGAGGTGCGACCCCAATTGGGAAAAGAACAGGAAGCATCTAGCAGACTGTGGCATTGGGTTTGGGAAGCAAGCGATTGGAGGCAGAGACGGTAAAATATACGTAGTGAGTGACCCTGGTGATCACCCTGTGAATCCCAAGCCAGGGACTCTAAGATACGGTGTTATCCAAGAAGAGCCCTTGTGGATAATATTCAAGGGGGACATGGTGATAAAGCTAAAAGAGGAGCTTATGATGAATTCTTTTAAAACCATCGACGGGAGAGGAGCAGATGTACACATTGCTGGTGGACCTTGCATTACCATACAGTATGTGACCAACATTATAATTCATGGCATTAACATTCATGATTGCAAGCAGGGTGGGAATGCCTACGTGAGAGACTCTCCAACCCATTACGGCTGGAGAACTCTTTCCGACGGTGATGCCGTCTCCATCTTTGGTGGGAGTCATGTTTGGGTGGACCACTGCTTCTTGTCAAATTGCCGCGATGGCCTAATTGATGCTATTCATGGATCCACAGCCATCACCATATCCAACAATTATATGACCCACCATGACAAGGTCATGCTTTTAGGCCACAGTGATTCTTATGTACAGGACAAGAATATGCAAGTCACCATAGCCTTCAACCATTTTGGCGAAGGCCTTGTGCAGAGAATGCCAAGATGCCGACATGGTTATTTTCATGTGGTGAACAATGACTATACCCATTGGATGAAGTACGCCATAGGCGGCAGTGCTGCCCCAACTATCAACAGCCAAGGCAACAGATTTCTTGCTCCCAGTGACGCAACTTTCAAAGAGGTTACTAAGCGGGAGAATGCAGGAGAGAGCCAATGGAAGAAATGGAATTGGAGGTCTTCGGGAGATTTAATGTTGAATGGAGCATTCTTCACTCCATCGGGAGCAGGAGCATCTTCAAGTTATGCTAGAGCATCCAGCTTGGCCGCAAAACCATCTACCCTCGTTGGTTCTATCACAGCAAGTGCTGGAGCTCTTAGATGCAGAAAGGGCTCGCGCTGCTGA 1203 0.4688 MAFPIISLMLLLLAPSFIFSSPVADPRSVVEEVHSIYNASRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKHLADCGIGFGKQAIGGRDGKIYVVSDPGDHPVNPKPGTLRYGVIQEEPLWIIFKGDMVIKLKEELMMNSFKTIDGRGADVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAYVRDSPTHYGWRTLSDGDAVSIFGGSHVWVDHCFLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYVQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWMKYAIGGSAAPTINSQGNRFLAPSDATFKEVTKRENAGESQWKKWNWRSSGDLMLNGAFFTPSGAGASSSYARASSLAAKPSTLVGSITASAGALRCRKGSRC 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach5g00011 400 SUPERFAMILY Pectin lyase-like 53 391 IPR011050 -
Bach5g00011 400 Gene3D - 52 393 IPR012334 -
Bach5g00011 400 PANTHER PECTATE LYASE 18-RELATED 30 398 IPR045032 GO:0030570
Bach5g00011 400 FunFam Pectate lyase 52 393 - -
Bach5g00011 400 PRINTS Pollen allergen Amb family signature 342 366 IPR018082 -
Bach5g00011 400 PRINTS Pollen allergen Amb family signature 75 92 IPR018082 -
Bach5g00011 400 PRINTS Pollen allergen Amb family signature 198 219 IPR018082 -
Bach5g00011 400 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Bach5g00011 400 PRINTS Pollen allergen Amb family signature 278 297 IPR018082 -
Bach5g00011 400 PRINTS Pollen allergen Amb family signature 371 394 IPR018082 -
Bach5g00011 400 PRINTS Pollen allergen Amb family signature 134 150 IPR018082 -
Bach5g00011 400 PRINTS Pollen allergen Amb family signature 98 123 IPR018082 -
Bach5g00011 400 SMART amb_all 126 323 IPR002022 -
Bach5g00011 400 Pfam Pectate lyase 132 317 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach5g00011 Bach-Chr5 110936 112447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach5g00011 1 400 Polysaccharide Lyase AT5G63180 76.790 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach5g00011 K01728 - gmx:100816256 726.087