Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach4g02152 ATGATTCCTTGTGTAGGAACCGTTATTGATGGGGAGCCAATAATTCAGTTACCCCCTAAAACAATCCAGCTGAATAAAGTGGATTTCTCATTTGAGGAGAGGGCATTCTACAAAAAGTTGGAAGCAGATTCACGTTCTCAATTTAAGGCATATGCGGCTGCTGGCACAGTGAATCAGAACTATGCAAATATTCTTCTAATGCTTTTACGTCTCCGTCAGGCTTGTGACCACCCACTTCTTGTTAAAGATTATGATTCTGACCCAGTTGGGAAAAATTCTGTAGAAATGGCGCATAGGCTTCCCAGGGATATGCTGATCAATCTTTTCAATTGTTTGGAAACTACCTTTGCAATATGTCAAGTTTGCAATGATCCTCCTGAAGACGCTGTTGTTACTATGTGTGGTCATGTCTTCTGTTATCAATGTGTGTCAGAATATTTGACAGGTGATGACAACACATGCCCTGCAATTGGTTGTAGAGAACAAATTGGTGACGATGTTGTTTTCTCCAAAGCTACTTTAAGAAGTTGCATCTCTGATGACCTTGGTGGTAGTAGTTCAGCAAATTCTCTTGTTGACTATTCAGCCGTACAGCAGAGTGAGTACAGTTCATCTAAAGTCAAAGCTATCCTTGAGATTCTGCAGTCAAATTGTAAAAGGAAGAGTTCAAGTTCTGGATTACCGAGTTCCTCTGGATATAGGAATTCATTGTCTTCTGATGATTCGGATATTGAAGATTGCCATTCAGAGGTTACAGTTGTAAAACGCACGAGAAAATATTCAGAGTCTCCAACTGAAGGACCAATAAAGACTATTGTTTTCTCCCAGTGGACTAGCATGTTGGACTTAGTTGAGAAGTCACTGAACCAGTCTTGCATACAGTACAGAAGATTTGATGGTACAATGACTCTATCTGCTAGGGACAGAGCTGTTAAAGATTTCAATACTGATCCTGAGGTCACTGTTATGCTGATGTCTCTAAAAGCTGGAAACCTTGGTTTGAACTTGGTTGCTGCATGCCATGTTATTCTTTTGGATCTATGGTGGAATCCAACAACTGAAGATCAAGCTGTTGATCGAGCTCATAGAATTGGACAGACCCGTCCTGTTATGGTGACGCGGATTACTATAAAAGACACCGTCGAAGATAGAATATTGGCTCTCCAGGAAGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGTGAAGACCATGCTGGGGGTACTGCAACTCGGCTTACCGTGGATGATCTGAAATATCTTTTCATGGTCTAAAACGCTGCTTTTGGATATCATAGTGCAAGTCAGCTTTCTTCTGGTTTAATATTGGCTGCAAATGGTTACCCCATTAACAAGGTAATCTATCTGTCTGGCTGTTTTGTTTT 1382 0.4074 MIPCVGTVIDGEPIIQLPPKTIQLNKVDFSFEERAFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYDSDPVGKNSVEMAHRLPRDMLINLFNCLETTFAICQVCNDPPEDAVVTMCGHVFCYQCVSEYLTGDDNTCPAIGCREQIGDDVVFSKATLRSCISDDLGGSSSANSLVDYSAVQQSEYSSSKVKAILEILQSNCKRKSSSSGLPSSSGYRNSLSSDDSDIEDCHSEVTVVKRTRKYSESPTEGPIKTIVFSQWTSMLDLVEKSLNQSCIQYRRFDGTMTLSARDRAVKDFNTDPEVTVMLMSLKAGNLGLNLVAACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVMVTRITIKDTVEDRILALQEEKRKMVASAFGEDHAGGTATRLTVDDLKYLFMV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach4g02152 423 ProSiteProfiles Zinc finger RING-type profile. 119 155 IPR001841 -
Bach4g02152 423 CDD SF2_C_SNF 266 374 - -
Bach4g02152 423 SMART helicmild6 282 365 IPR001650 -
Bach4g02152 423 SUPERFAMILY RING/U-box 116 177 - -
Bach4g02152 423 Gene3D - 18 422 IPR027417 -
Bach4g02152 423 MobiDBLite consensus disorder prediction 220 238 - -
Bach4g02152 423 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 255 418 IPR001650 -
Bach4g02152 423 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 422 IPR027417 -
Bach4g02152 423 Pfam Zinc finger, C3HC4 type (RING finger) 118 163 - -
Bach4g02152 423 SMART ring_2 119 157 IPR001841 -
Bach4g02152 423 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 10 422 - -
Bach4g02152 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 169 IPR013083 -
Bach4g02152 423 MobiDBLite consensus disorder prediction 220 244 - -
Bach4g02152 423 Pfam Helicase conserved C-terminal domain 270 365 IPR001650 -
Bach4g02152 423 ProSitePatterns Zinc finger RING-type signature. 134 143 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach4g02152 Bach-Chr4 29835386 29839660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach4g02152 6 423 RAD5 or RAD16-like Gene Family AT1G61140 55.131 4.13e-143 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach4g02152 - - gmx:100795142 686.026