Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach4g02080 ATGGGTCGAGGGACAGTTGAACTGAAGAGGATAGAGAACAAAATCAACCGGCAGGTTACTTTCTCGAAAAGAAGGAACGGTTTGCTCAAGAAAGCCTATGAACTGTCTGTGCTGTGTGATGCTGAGATTGCCCTTATCGTTTTCTCTAGCCGTGGCAAGCTCTATGAATTTGGAAGCTCTGGTATTACCAAAACCCTCGAAAGATACCAGCGCTACTCCTTTACTCCTCAAGACAGCACTGTTGAACGTGAAACTCAGAGCTGGTTCCATGAGGTATCAAAGCTAAAGGCCAAGTATGAGTCTCTCCAAAGAACTCAACGGCATTTGCTTGGGGAAGATCTTGGACCTTTGAGCGTGAAAGAGCTGATAAATCTTGAGAAGCAGCTTGAAGGAGCTCTAGCACAAGCTAGGCAAAGGAAGACACAAATTATGATTGAACAAATGGAAGATCTTCGTAGAAAGGAACGCCACCTCGGAGATATTAACAAGCAGCTTAGGCTCAAGATTGAATCAGAGGGATATAATCTCAAAGCCAATGAAAGCTTGTGGAGCCCTACTTCAGCACCTGGAAACAGCAGCTTTCTCATCCACCCTTCTCAAGCTATCCCTATGGAATGTCAAGCAGAGCCTAATTTCTTGCAAATAGGGTACCATCAGTATGATCAAGCGGAGCCCTCAAGTGTTTCAAAGAGCGTGGCTGGAGTGACCAATTTCATGCAGGGATGGATCCTTTGA 735 0.4531 MGRGTVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIVFSSRGKLYEFGSSGITKTLERYQRYSFTPQDSTVERETQSWFHEVSKLKAKYESLQRTQRHLLGEDLGPLSVKELINLEKQLEGALAQARQRKTQIMIEQMEDLRRKERHLGDINKQLRLKIESEGYNLKANESLWSPTSAPGNSSFLIHPSQAIPMECQAEPNFLQIGYHQYDQAEPSSVSKSVAGVTNFMQGWIL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach4g02080 244 FunFam MADS-box transcription factor 1 13 86 - -
Bach4g02080 244 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Bach4g02080 244 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach4g02080 244 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach4g02080 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bach4g02080 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bach4g02080 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bach4g02080 244 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Bach4g02080 244 Coils Coil 119 142 - -
Bach4g02080 244 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Bach4g02080 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bach4g02080 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 178 - -
Bach4g02080 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bach4g02080 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach4g02080 Bach-Chr4 28572478 28576204 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach4g02080 1 244 MADS-box Gene Family AT2G45650 65.217 3.28e-112 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bach4g02080 K-box 7.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach4g02080 K09264 - vvi:100232868 384.03