Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach4g01875 ATGAAGCGCGACTACCTCGAACTCTCCGATGAAGAATGGGAGAATCACACCTTCAATTCTTCTCGAGTTTTCAAGCGAACTCAGATTGATAATGCTACTGCTCCACCGCCGATTGAATCCTTCGCCTTTGGGTCTCGGAAGCCCGAGATTTCTGACCAGAGCAGCGACGATTGCGTCGAAATCACGGAAAACTTGGAGGAAGGATTGGAAGATGAAGATTTGGAGCATGATAGAGGTAAGTCTGTGGCCGTGGCAAATCGTGGCCGTAGATTTGTTGTTGATGATGATGATGATGAGGAGGAGGTAGTGAGCGATAGGGATATTAGGGAAGTGTATGAAATAGAATCTTCAGAGGAAGAAGAGGTGGAGAATGATAACGATGTCGTTGGAAGGGCTTTACAGAAGTGTGCCAAAATATCTTCAGAATTGAGAAGAGAGTTGTATGGGTCTTCGGGGACTGCTTGTGACCGGTATTCTGAAGTGGAATCATCAACAGTGAGAATTGTAACCCAGGATGATGTTGATGTTGCATGTGGATCAGAGGATTCAGATTTTCACACTACCCTCAAGCCATATCAGTTGGTTGGTGTTAATTTTTTGCTTCTGTTGTATCAGAAGGGTATTGGAGGAGCTATATTGGCAGACGAAATGGGTCTTGGCAAAACAATTCAGGCTATCACTTATTTAACTTTGCTGAAACACTTGAACAATGATCCTGGTCCACATCTTGTAGTATGTCCTGCGTCTGTTCTGGAAAACTGGGAAAGGGAACTAAAAAGGTGGTGCCCATCCTTTTCTGTTCTCCAATACCATGGAGCTGGACGAGCTGCATATGCCAAGGAATTGAATTCTCTATCCAAGTCAGGATTGCCCCCTCCATTTAACGTTCTTCTTGTTTGTTATTCACTTTTCGAGCGGCACAGTCCGCAGCAGAAAGATGATCGTAAAATTCTAAAACGTTGGAGATGGAGCTGTGTGCTGATGGATGAAGCACATGCTATGAAGGATAAGAATAGCTATAGGTGGAAGAATCTGATGTCTGTTGCAAGACATGCAAACCAGCGTTTGATGCTAACGGGGACACCTCTTCAAAATGATCTACATGAGTTATGGTCAATGTTGGAGTTTATGATGCCTGATCTTTTTAGTACTGAAGATGTTGACTTGAAAAAGTTACTGAATGCAGAAGATAGAGATTTAGTTAATCGTATGAAATCCATTCTGGGGCCATTTATTTTGCGGCGGCTAAAATCTGATGTGATGCAGCAACTTGTTCCTAAAATACAGCGGGTTGAATACGTTGTAATGGAAAAGCAACAGGAATATGCCTACAAGGAAGCCATTGAAGAGTATCGTGCCATATCACAAGCCAGGATTGCAAAAAGTTCTGGGCTCAACTCAAATAATGTTATTCAAGTGTTTCCTCGCCGACAAATAAACAACTATTTTGTTCAATTCCGCAAGATTGCAAACCATCCCTTGTTGGTGAGGCGCATCTACAGTGATGAGGATGTCATTCGCTTTGCCAAGAAGTTACATCCAATGGGTGCTTTTGGCTTTGAATGTACTTTGGACAGAGTTATCGAAGAACTTAAAAGTTACAATGACTTCTCTATTCATCAGCTTTTGCTTAACTATGGTGTCACTGATAAAAAGGGAGTCCTTTCAGATAAGCATGTTATGGTTTCTGCAAAATGCCGGGCCTTGGCAGGACTTCTTCCTTCACTAAAGCACTGCGGTCATCGTGTCTTAATCTTTAGTCAGTGGACGTCAATGCTTGACATATTGGAGTGGACATTGGATGTCATTGGGTTGACCTATAGACGGCTTGATGGAAGTACACAGGTAACTGAGAGGCAAACAATAGTTGACACATTTAATAATGATACTTCAATATTTGCATGCTTGCTTTCCACGAGAGCTGGAGGACAAGGCTTGAACTTAACAGGAGCTGATACTGTTGTCATTCATGACATGGATTTCAATCCACAAATTGATAGACAGGCTGAAGATCGTTGTCATCGAATAGGTCAAACCAAACCTGTAACCGTATACCGGCTGGTGACCAAGGGAACAGTTGACGAAAATGTGTATGAGATAGCAAAAAGAAAGCTAGTACTGGATGCTGCAGTCCTCGAGTCTGGAATGGAGATGGATAAAGGTGACGTTGCTGAGATGACCATGGGAGAGATATTATCTGCGATTTTGTTGGGTTAG 2217 0.4267 MKRDYLELSDEEWENHTFNSSRVFKRTQIDNATAPPPIESFAFGSRKPEISDQSSDDCVEITENLEEGLEDEDLEHDRGKSVAVANRGRRFVVDDDDDEEEVVSDRDIREVYEIESSEEEEVENDNDVVGRALQKCAKISSELRRELYGSSGTACDRYSEVESSTVRIVTQDDVDVACGSEDSDFHTTLKPYQLVGVNFLLLLYQKGIGGAILADEMGLGKTIQAITYLTLLKHLNNDPGPHLVVCPASVLENWERELKRWCPSFSVLQYHGAGRAAYAKELNSLSKSGLPPPFNVLLVCYSLFERHSPQQKDDRKILKRWRWSCVLMDEAHAMKDKNSYRWKNLMSVARHANQRLMLTGTPLQNDLHELWSMLEFMMPDLFSTEDVDLKKLLNAEDRDLVNRMKSILGPFILRRLKSDVMQQLVPKIQRVEYVVMEKQQEYAYKEAIEEYRAISQARIAKSSGLNSNNVIQVFPRRQINNYFVQFRKIANHPLLVRRIYSDEDVIRFAKKLHPMGAFGFECTLDRVIEELKSYNDFSIHQLLLNYGVTDKKGVLSDKHVMVSAKCRALAGLLPSLKHCGHRVLIFSQWTSMLDILEWTLDVIGLTYRRLDGSTQVTERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTVYRLVTKGTVDENVYEIAKRKLVLDAAVLESGMEMDKGDVAEMTMGEILSAILLG 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach4g01875 738 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 571 727 IPR001650 -
Bach4g01875 738 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 202 380 IPR014001 -
Bach4g01875 738 SMART helicmild6 594 677 IPR001650 -
Bach4g01875 738 Pfam SNF2-related domain 209 495 IPR000330 GO:0005524|GO:0140658
Bach4g01875 738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 415 IPR027417 -
Bach4g01875 738 CDD SF2_C_SNF 555 688 - -
Bach4g01875 738 Gene3D - 546 732 IPR027417 -
Bach4g01875 738 MobiDBLite consensus disorder prediction 27 56 - -
Bach4g01875 738 FunFam Protein CHROMATIN REMODELING 19 isoform A 160 438 - -
Bach4g01875 738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 321 717 IPR027417 -
Bach4g01875 738 Gene3D - 164 440 IPR038718 -
Bach4g01875 738 PANTHER SNF2/RAD54 HELICASE FAMILY 89 715 - -
Bach4g01875 738 Pfam Helicase conserved C-terminal domain 565 677 IPR001650 -
Bach4g01875 738 SMART ultradead3 185 390 IPR014001 -
Bach4g01875 738 CDD DEXHc_Snf 189 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach4g01875 Bach-Chr4 18218395 18224903 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach4g01875 210 728 RAD5 or RAD16-like Gene Family AT5G22750 25.750 1.06e-43 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bach4g01875 SNF2_N 9.3e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach4g01875 K14439 - qsa:O6P43_026001 1176