Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach4g01868 ATGGGAAATTCAAGAAGACTGGTATGGCCATGGAGAGGTTTAGCAGAGGTGAAGAGGACGGTGGACCACATGGCAGAGGACGTTGAACAAATGAAGGAAATGATGGAAGCCATTTGCAACAAGGTAAATACGGGTCCTTCAAACTTGGGCAAAGGACCATTGACGAGAGGTTCAGGGGAAAATCCAGCAGACGTTTGGGTCTTGCAGAATGACTATTGGAGGGCTACAAGAAGGGCGGAGTTAACAGAAAGCAACCGAGCCATGGAGCTTGCTCGGGACGAAGAAGAGGATCGGGATGAAGAACAGGTGCCCACGTTTGAGCCCATACCCTTTCAAACCAAGTCAACGGGTATCAACATGGGTTCGGGTTCAAGGTTGATGGATGCAAGTCAAACCAAGAGCACACCCGATCCAAGCCACTCGCAGGGGCCGAACATTTTCAATGGCCCGAGGTCACCTAGCTTTGGGTCGGTAACTAGCCGGCCTCACACCATCTCCCAGGATGGGTCTGCTACGAGCAACGCAGTGCCGTCTCAACCAAGGGCTCAGGGACGTCACCTAGCCGTGGGTGAGAAATTGGAGGAGCAGCTGGCGTTAATGAACGACGGTGGAGAAACAGAGGAACCGGGGACCGAAGGAGAAAAGTCAGAGGCAAAGCTGGCTTGGCTTGACGCCGGGGAAGAAATCAAAGGGGTAGCCGACAATCAAATTGAGGTCAATGAGGTGAGTAAGGAGATGGATTTAGATCTAATCAAGCAAAACAGTCAAGTGGAGAGGGTAATTGCAGGTAGGATCAGCAGAGATAACTTTGACAATGTCATTCCTGAATACCTGGTCAAATGGCAAGGACTATCCTATGCAGAAGCAACATGGGAGAAGGATGTTGATATTGCTTTCGTTCAACATGCCCTTGACGAGTATAAGGCTTGTGAGGCTGCTATGTCAGTTCAAGGAAAGATGGTAGATCCCCAGCGCAAGAAGAGCAAAGCAAGTTTGCAGAAGCTTGATAAACTGCCTGAATGGTTGAAGGGTGGAAGGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGTTGGAAAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGGAAAACTGTCCAGTCGGTATCAATGCTTGGTTTTCTACAGAATGGCCAGCAAATCCATGGTCCCTTTCTTGTGGTTGTCCCATTGTCCACGTTGTCAAACTGGGCCAAAGAATTCTGGAAGTGGCTTCCTGATATGAATATTATTGTGTATGTTGTTATTTTGAAGGATAAGGCTGTTCTCTCCAAAATCAAATGGAATTATCTTATGGTTGATGAGGCCCATAGACTAAAAAATAGCGAGGCACAGTTGTACACAACACTTTTAGAATTTAGCACCAAGAACAAGCTGCTTATCACTGGTACTCCCCTACAGAATAGCGTTGAGGAGTTATGGGCTTTGCTTCACTTCCTTGATCCTGATAAGTTTAAGAGCAAGGATGACTTCGTTCAAAACTACAAGAGTCTAAGTTCATTCAATGAAAATGAGCTTACTGATCTTCATATGGAATTAAGGCCTCACATACTCCGAAGAGTTATCAAAGATGTGGAGAAATCTTTAGCCCCCAAAATTGAGCGAGATCGAGGGAATCAGGGTTCTCTTCTTAATATTGTGGTAGAATTAAAGAAGGGCTGCAATCGCCCCTTCCTATTTGAAAGTGCTGACCATGGTTATGGTGGGGACTCAGGAAGTAGTGACAGCATTAAAGTGGAGAGAACTGTCTTTAGCAGTGGGAAGCTTGTCATACTTTATAAGCTGCTGGTTCGATTGCATGAGACAAAGCATCGTGTTCTGATTTTCTCTCAGATGGTCGGGATGTTGGATATGCTGGCAGACTATATGTCACTTAGAGGGTACCAATTCCAGAGGCTTGATGGCAGTACAAAGGCTGAGTTGCGGCATCAGGCTATGGACCATTTTAATGCACCTGGTAGTGATGATTTCTGCTTCCTCCTTTCAACACGAGCAGGGGGTCTTGGTATAAACCTTGCCACAACAGACACTGTTATAATATTTGATTCGGACTGGAATCCCCAAAATGACCTACAGGCCATAAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTAAACATTTATAGATTTGTAACAAGCAAAAGTGTAGAGGAAGGTATTTTGGAACGAGCTAAGAAGAAAATGGTTCTCGATCATTTGGTGATTCAAAATTTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAAGTTATTTTGACAAAAATGAGCTATCAGCAATCTTAAGATTTGGAGCGGGAGAGCTTTCTAAGGAGGAGAAACATGATGAAGAAAGCAAGAAACGACTCTTAAGTATGGATGTAGATGAGACACTCGAAAGAGCAGAGAAGGTTGAGGAGGCGGAAGATGAGGGAGAACAAGCGTATGAGTTGTTGAGTGCCTTTAAGGTTGCTAATTTCACTAATGGTGAGGACGATGGAAGTTTCTGGAGTCGTTGGATAAAACCTGAAGCAGTGACCCAAGCTGAAGAAGCCCTTGCTCCTTGTGCTGCAAGGAATATTAAAAGTTATGCAGAGGCTAATCAATCTGGAAGAGCAGAGTTTTCTGACAGAGAGCAAATTGCATCAAGTTTGGGAACAAATAGGACTGAATGGAGTGTAAGTGTGGGAGAGAGAGTAACTGTGCCATATCCCATGGCTGTATTGTGTGATCCATTTGCTATGTGA 2778 0.4467 MGNSRRLVWPWRGLAEVKRTVDHMAEDVEQMKEMMEAICNKVNTGPSNLGKGPLTRGSGENPADVWVLQNDYWRATRRAELTESNRAMELARDEEEDRDEEQVPTFEPIPFQTKSTGINMGSGSRLMDASQTKSTPDPSHSQGPNIFNGPRSPSFGSVTSRPHTISQDGSATSNAVPSQPRAQGRHLAVGEKLEEQLALMNDGGETEEPGTEGEKSEAKLAWLDAGEEIKGVADNQIEVNEVSKEMDLDLIKQNSQVERVIAGRISRDNFDNVIPEYLVKWQGLSYAEATWEKDVDIAFVQHALDEYKACEAAMSVQGKMVDPQRKKSKASLQKLDKLPEWLKGGRLRDYQLEGLNFLVNSWKNDTNVILADEMGLGKTVQSVSMLGFLQNGQQIHGPFLVVVPLSTLSNWAKEFWKWLPDMNIIVYVVILKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLLEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFKSKDDFVQNYKSLSSFNENELTDLHMELRPHILRRVIKDVEKSLAPKIERDRGNQGSLLNIVVELKKGCNRPFLFESADHGYGGDSGSSDSIKVERTVFSSGKLVILYKLLVRLHETKHRVLIFSQMVGMLDMLADYMSLRGYQFQRLDGSTKAELRHQAMDHFNAPGSDDFCFLLSTRAGGLGINLATTDTVIIFDSDWNPQNDLQAISRAHRIGQQEVVNIYRFVTSKSVEEGILERAKKKMVLDHLVIQNLNAEGRLEKKEAKKGSYFDKNELSAILRFGAGELSKEEKHDEESKKRLLSMDVDETLERAEKVEEAEDEGEQAYELLSAFKVANFTNGEDDGSFWSRWIKPEAVTQAEEALAPCAARNIKSYAEANQSGRAEFSDREQIASSLGTNRTEWSVSVGERVTVPYPMAVLCDPFAM 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach4g01868 925 Pfam Helicase conserved C-terminal domain 602 715 IPR001650 -
Bach4g01868 925 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 359 497 IPR014001 -
Bach4g01868 925 Pfam SNF2-related domain 423 549 IPR000330 GO:0005524|GO:0140658
Bach4g01868 925 Pfam Chromo (CHRromatin Organisation MOdifier) domain 256 308 IPR023780 -
Bach4g01868 925 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 605 756 IPR001650 -
Bach4g01868 925 Coils Coil 745 765 - -
Bach4g01868 925 SMART ultradead3 343 508 IPR014001 -
Bach4g01868 925 FunFam protein CHROMATIN REMODELING 5 isoform X2 257 309 - -
Bach4g01868 925 SMART helicmild6 631 715 IPR001650 -
Bach4g01868 925 Gene3D - 554 746 IPR027417 -
Bach4g01868 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 440 759 IPR027417 -
Bach4g01868 925 CDD SF2_C_SNF 592 726 - -
Bach4g01868 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 534 IPR027417 -
Bach4g01868 925 SUPERFAMILY Chromo domain-like 236 309 IPR016197 -
Bach4g01868 925 ProSiteProfiles Chromo and chromo shadow domain profile. 255 307 IPR000953 -
Bach4g01868 925 MobiDBLite consensus disorder prediction 110 180 - -
Bach4g01868 925 CDD CD2_tandem 253 309 - -
Bach4g01868 925 SMART chromo_7 253 312 IPR000953 -
Bach4g01868 925 MobiDBLite consensus disorder prediction 110 185 - -
Bach4g01868 925 Coils Coil 78 98 - -
Bach4g01868 925 Gene3D - 429 552 IPR038718 -
Bach4g01868 925 Gene3D - 315 428 IPR038718 -
Bach4g01868 925 Coils Coil 14 34 - -
Bach4g01868 925 Gene3D - 240 309 - -
Bach4g01868 925 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 551 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach4g01868 Bach-Chr4 17936704 17940649 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach4g01868 591 761 RAD5 or RAD16-like Gene Family AT5G22750 32.948 1.01e-20 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bach4g01868 SNF2_N 7.2e-29 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach4g01868 K11367 - gmx:100808039 1066.6