Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach4g01852 ATGGCTTCTCATTGCCATCCACAGAAAACTGTCCACTTCTTTAAGGTTATTCTGAAATGTATGCTTAGCGACGGAGTTCTTAGGATTCCAAGCGATTTTACAAGAAAATATGGAGGTTTTCTACCAAATCCAGTCTTTCTTAAGCCTCCGGATGGCACTAAATGGAAAATATTCTGGAAAAAGCATGCTGGTGACATTTGGTTTGAGAAGGGTTGGAAAGAGTTCGCTACACATTACTCTCTTGATCATTGGTATTTCTTGTCATTTAAATACGATGGAACTTGTAATTTAGAAGTGGTCATATTTAATGTGACCGCCCTCGAAATAGAGTATCCTTCCCATGTCATTGATGATGAAGATGACAATCTTGAAAAGTTCAGTGATGATTCAATTGAATTTTTGGGTGAGGGACCTCCACATCCAAAAGCTAGACCAAGGTCACCATTGTCAGATAGTGGTAGGAAACTGAGAAGTGGCAAGATTAGAGCTACTTTAAGCAGACCTAATCTAAAGAAATGCCAAACCCATAATGTTAGAGATAAATCACCATTATTGCCTCTTCGTCCTTGTAAGAAAATGAGAGCTTGTACAAATGGTGAAGATAAAAGCACTTCCAATCTGCAGAAGAAGCCAATCAACGGAGAACTTAGTGGTAGGAAATTGAGAAGTGGCAAGATTATAGCTACTGAAAGAAGCCCTGATATGAAGAAATGCCAAACCCATAACAGAGAGAAATCACCATTATTGCGTCTTCGTCCTTGTAAGAAAATGAGAGCCTATACAAATGGTGAAGATAAAAGTACCTCCAATCTCCAGAAGAAGCCAATCTATGGAGAACTTAGTGGTAGGAAATTGAGAAGTGGCAAGATTAGAGCTACTGAAAGAAGCCCTAATCTGAAGAAATGCCAAACCCATAATGTTAGAGACAAATCACCATTATTGCCTATTCGTCCTTGCAAGAAAATGAGAGCTTGTGCAAATGGTGAAGATAAAAGTACCTCCAATCTGCAGAAGAAGCCAATCAATGGAGAACTTATTCAAGTAGAAGGTAGAAGCAACTTTTCTACTAGGAAATGCTCAAATTCCCTGGCTATTAGAAGCAGCAAATCATTAACTGAAGTTGAAAAGGCTAGAGCATTACAGAGAGTCAGTACTTTCAGCTCTAAATATCCCCATTTCAAGCGTATCATTCAGCCATCATATGTTTCAAGACCTTCCTTGAGAAGTCCATCACACTTTTTCAAACAACACTTGAAGAAGAAGCAAGGAGCTGTCCTGCTCCAAGCCTTGGATGGGAGAACTTGGTCTAGTACGTACAAAGTCAGTCCCCTTGGCAATCAAGTGTACATATCTGACTGGAGAGCATTTGCAAAAGACAATTTTGTGGAAGTGGGTGATGTTTGTGTGTTTGAGCTCACCCACACAACCAAAGCTACTCTTCGAGTAACAATTTCAAGACCTTCTGAACAACCTTTTTTTCTTGTGAATTCAGTATCAGCACAAAGGGATAAAAGTAAAGCTAGAAAGAAATCACCATTGCCGCCTCTTCGTCCTTCTAAGAAAATGAGAGCTTGTACAAATGGAGAAGATGAGAGTATCTCCAGTCTGCAGAAGAAGCCAGTCAATAGAGAACTAGTTCAAGTGGAAGGTAGCAGCGAATTTTCTGCTAAGAAATACTCAAATTTCCTGGCTATTGGAAGGAGCAAAGCGTTAACTGAAGTTGAAAAGTCTAGAGCATTGCAGAGAGTCAGTACTTTCAGTTCTGAATATCCCCATTTCAAGCGTGTCATGCAGCCATCATATGTTTCAAAAAATAACTTGACAATTCCATCTCAATTTTGCAAACAACACTTGAAGAAGAAGCACGGAGCTCTCCTGCTCCAAGATTTGGATGGGAGAACTTGGTCTACTAGATACAAAGTTGGTCCTAAGAATGACGTTTACATATCTGGCTGGAAAGCATTTGCGAAAGACAATTATGTGGAGGTGGGTGATGTTTGTGTGTTTGAGCTCATCCAGAGAAGCAAAAATACACTTCGAGTAACAATTTCAAGACCTGCTGAACAGCCTACTTGTCTTGGGGATTCAGATACGCAGGTTATTCAAAGGCTTCCATCATTGACTCAGCTTGATTCAACCACTGCTCTTGAAGAAACTGGGAAATTAAACTTGGAAAATCCCTCTTTCATAGTCACTGTAAAGAAATGTCATCTTTCTGCGGCACTGACGGAGAAGGCTTTCTTGAAGCAACCCAAGGTGTTTCTCTGCTCGAAGAAATCTGGAAAGGGGAAGAGGCCTGGGAAAGGAGGGAACCGGTTCTGGAAGTCTATTGGGTTGGGATTCAAGACACCCAGAGAGGCAATTGAAGGAACTTACATTGATAAGAAATGTCCATTTACTGGCACCGTTTCCATCCGGGGCCGCATTCTTGCTGGTACTTGCCATAGTGCCAAGATGAACAGGACTATCATTGTCCGCCGCAACTACCTTCATAATACCAAAGGCAATTCTCCTTCACCTTTTGATAAATTGAGATCAACTATTCTGTACGAGAAGAGGCATTCAAACATTCCAGCTCATATTTCTCCATGTTTCCGTGTGAAGGAGGGAGACCATGTCATTATTGGGCAATGCAGGTTACCTTTGTCCAAGACCGTTAGATTTAATGTGTTGAAAGTGATTCCAGCTGGGTCTTCTGGAGGTGTGAAGAAAGCTTTTACCGGAGTTTAA 2730 0.4088 MASHCHPQKTVHFFKVILKCMLSDGVLRIPSDFTRKYGGFLPNPVFLKPPDGTKWKIFWKKHAGDIWFEKGWKEFATHYSLDHWYFLSFKYDGTCNLEVVIFNVTALEIEYPSHVIDDEDDNLEKFSDDSIEFLGEGPPHPKARPRSPLSDSGRKLRSGKIRATLSRPNLKKCQTHNVRDKSPLLPLRPCKKMRACTNGEDKSTSNLQKKPINGELSGRKLRSGKIIATERSPDMKKCQTHNREKSPLLRLRPCKKMRAYTNGEDKSTSNLQKKPIYGELSGRKLRSGKIRATERSPNLKKCQTHNVRDKSPLLPIRPCKKMRACANGEDKSTSNLQKKPINGELIQVEGRSNFSTRKCSNSLAIRSSKSLTEVEKARALQRVSTFSSKYPHFKRIIQPSYVSRPSLRSPSHFFKQHLKKKQGAVLLQALDGRTWSSTYKVSPLGNQVYISDWRAFAKDNFVEVGDVCVFELTHTTKATLRVTISRPSEQPFFLVNSVSAQRDKSKARKKSPLPPLRPSKKMRACTNGEDESISSLQKKPVNRELVQVEGSSEFSAKKYSNFLAIGRSKALTEVEKSRALQRVSTFSSEYPHFKRVMQPSYVSKNNLTIPSQFCKQHLKKKHGALLLQDLDGRTWSTRYKVGPKNDVYISGWKAFAKDNYVEVGDVCVFELIQRSKNTLRVTISRPAEQPTCLGDSDTQVIQRLPSLTQLDSTTALEETGKLNLENPSFIVTVKKCHLSAALTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHNTKGNSPSPFDKLRSTILYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLPLSKTVRFNVLKVIPAGSSGGVKKAFTGV 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach4g01852 909 Pfam Ribosomal_S17 N-terminal 743 810 IPR032440 -
Bach4g01852 909 SUPERFAMILY DNA-binding pseudobarrel domain 386 488 IPR015300 -
Bach4g01852 909 SMART B3_2 393 488 IPR003340 GO:0003677
Bach4g01852 909 SMART B3_2 13 105 IPR003340 GO:0003677
Bach4g01852 909 SMART B3_2 593 687 IPR003340 GO:0003677
Bach4g01852 909 CDD B3_DNA 12 103 IPR003340 GO:0003677
Bach4g01852 909 Gene3D - 730 908 - -
Bach4g01852 909 ProSiteProfiles B3 DNA-binding domain profile. 392 488 IPR003340 GO:0003677
Bach4g01852 909 Gene3D - 5 106 IPR015300 -
Bach4g01852 909 FunFam 40S ribosomal protein S11 738 909 - -
Bach4g01852 909 Gene3D - 570 688 IPR015300 -
Bach4g01852 909 Gene3D - 370 489 IPR015300 -
Bach4g01852 909 Pfam B3 DNA binding domain 19 102 IPR003340 GO:0003677
Bach4g01852 909 Pfam B3 DNA binding domain 393 486 IPR003340 GO:0003677
Bach4g01852 909 Pfam B3 DNA binding domain 594 685 IPR003340 GO:0003677
Bach4g01852 909 SUPERFAMILY Nucleic acid-binding proteins 806 897 IPR012340 -
Bach4g01852 909 ProSiteProfiles B3 DNA-binding domain profile. 592 687 IPR003340 GO:0003677
Bach4g01852 909 CDD B3_DNA 391 486 IPR003340 GO:0003677
Bach4g01852 909 SUPERFAMILY DNA-binding pseudobarrel domain 8 112 IPR015300 -
Bach4g01852 909 Pfam Ribosomal protein S17 812 892 IPR000266 GO:0003735|GO:0005840|GO:0006412
Bach4g01852 909 SUPERFAMILY DNA-binding pseudobarrel domain 586 686 IPR015300 -
Bach4g01852 909 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Bach4g01852 909 PANTHER B3 DOMAIN-CONTAINING 8 476 - -
Bach4g01852 909 MobiDBLite consensus disorder prediction 196 215 - -
Bach4g01852 909 CDD B3_DNA 591 685 IPR003340 GO:0003677
Bach4g01852 909 MobiDBLite consensus disorder prediction 503 533 - -
Bach4g01852 909 MobiDBLite consensus disorder prediction 134 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach4g01852 Bach-Chr4 17608319 17620892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach4g01852 740 909 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 81.176 7.81e-77 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bach4g01852 B3 8.1e-22 CL0405