LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach4g01685	ATGACACTTGATGGCAAGGAAGTCATGAGGATATGGAATGGTCAGTTTCCTTCAAATCTTTTCAGCAATTTGCAATTTGTCCGGCTACGTCATTTTTATGATGAGCGTTTTAGTTTTCCATATTGGTTACTTCAGAGAATCCCCACTCTTGAAGAGCTATTTGTGGAATATAGTTCATTCAAAGAGATATTCCTATATATGCCTACTACAGTGGAAAAATTATGGTTATGGGGATTGGGCAAGTTAGAGAACATTTCGAAAGAAGGGTCCCAAGTAGATATTGTTCTTGAGAAACTAAAACATCTATGTATAACGGAATGTTCAAATTTGCAGAAATTAGCACACTCCAAAGTTTCTTTTAATCATTTGACTTGCTTGGAAGTAAAGAAATGTGAGAGCATGGTAAAACTTATAACATCCTCAACAGCTAGGAGCTTGGCACAGCTGAAGACATTGAAAATAAAGGACTGCAAAAAGATAGAAGAAATTATAGCAAGTGATACCCTTGAAAATCAGGAAATTGATTTCCGCCAGTTGCAAATTATGAAACTTGAGTGCTTACCGAACCTCGTGCATTTCTGCTCAAATAATTGTCTGTTGAAATTTCCATACTTGGAAGGACTGCATGTCAAAGAATGCCTTAGGATGAAGATATTTTCTACGGGAACAGTAAGAACACCAAAGCTACAGAAAGTACAAGTAGAAGGAACAGAAGATGAATGGTATTGGGAGGGGAATCTGAATGCCACCATAAAAAGGTTGTTTATGGACAAGGTTGCACTCCATAGCCTAGAGCATCTGGAATTATGTGAATTCCCGGAGCTGTATGAAATTTGGCATAAAAAATTTCCAGACAGGTGTTTTCGCAAGCTGAAATTACTGGTGGTGGAAAACTGTCACTCTTTATCAAATGTCATCTCGTTGAAGTTGCTAGGACTCCTAAAACAGTTGGAAGAGCTAAAAGTTGAAAATTGTGATGGAATAGAAACCATCTTCAACTTGGAAGGGATAAATGAGGAAGAGGAGAGTAAAATGGAAGCTGCAAGCTTACGAAGTCTACGTTTGAATAATCTGCCAAGATTGAAACATGTGTGGGAAAGAGATCCTCAAGATTTCATCACCTTTCAAAACCTGCACGTTGTAAAAGTTCTGAATTGTAAGAGTCTGAATTATCTATTTCCTTTGTCTGTAGCCAAAGCTCTTACTGAACTTGAAGGGATCATGGTATATAAATGTGAGATGTTGGAAACTGTTGCCAAGGACGAAGGAGTTGCAACAACTATTAGCTTTATATTCCCCAGAGTAACTAAAGTATGTCTTGGCAGTTTACCTAAATTCAAAAAAATTTATCCTGGACCACATACCATAGAAAGGCCAATGTTGAAAGACATAGAGATGCTTGATTGTAACCAAATGGCACTATTCATGGAAGATTCTGTAAATTCTGGAGAACCACAGTCAGTGAATCAACGTGTAGGCATTGAACAAGCCATTTTCTCAGTTGAAAAGGTAATTCCCAATTTGGAGGACTTGTCATTAGATAGCGAGAATGTAATGAGGATACAGCAGGGACATATACCCGTAGAACTTTTCCACGGCCTAAAACAACTGCGGCTCCATTCCTTTGATGATGAATCTGCTACATTTCCATATTGGTTGCTTGAAGCAATACCCACTTTGGAAAGACTTGGTTTCCCATTATTGGAGAGTGTCATTGTAAAAGAATGCCCCGGGATGAAAGTATTCTTCTGTGGAGTTTCAGGCACACCAAAGCTACAGAAAATTCATATAGATGAGAATACAAATAAAGCTTACTGGCAAGGTAACCTGAATGCTACGGGGGAGAAGTTGTTCAAGGACAGGTTTCTCTATTTGGGCAATTACCATAGTGCCTCCCATTTCGAGCTTCTGAAGGCTGTGGGAATATCTTTTATCCTCAATACAGTACCTTCTTGTCCAAATCACCACCCAAGCTCATTTACCTATCACAGCCTGTCAATCTCACATGACAAAACTTGGCCATTTGATGAGGCAGTTCAGTTTCTAGAGAAATGTGAGAATGACAAGGGAAAGGTTCTGGTTCATTGCATGTCAGGCAATAATAGATCTCCAGCTATTGTTACTGCATACTTGATGAGGTCCAAAGGATGGAGACTTGCAGAGAGCTACCAATGGGTGAAAGAGCGAAGGCCTTCAGTTAAATTGACCGAAGCTGTCTACCGGCAACTGCAGGAGTATGAGCGTGGCATATATGGATCAGTTGATGATGTTAGCAACTCATATAATGCCAATCCACCCAATCCAAATCGCGCCGAGTGA	2319	0.395	MTLDGKEVMRIWNGQFPSNLFSNLQFVRLRHFYDERFSFPYWLLQRIPTLEELFVEYSSFKEIFLYMPTTVEKLWLWGLGKLENISKEGSQVDIVLEKLKHLCITECSNLQKLAHSKVSFNHLTCLEVKKCESMVKLITSSTARSLAQLKTLKIKDCKKIEEIIASDTLENQEIDFRQLQIMKLECLPNLVHFCSNNCLLKFPYLEGLHVKECLRMKIFSTGTVRTPKLQKVQVEGTEDEWYWEGNLNATIKRLFMDKVALHSLEHLELCEFPELYEIWHKKFPDRCFRKLKLLVVENCHSLSNVISLKLLGLLKQLEELKVENCDGIETIFNLEGINEEEESKMEAASLRSLRLNNLPRLKHVWERDPQDFITFQNLHVVKVLNCKSLNYLFPLSVAKALTELEGIMVYKCEMLETVAKDEGVATTISFIFPRVTKVCLGSLPKFKKIYPGPHTIERPMLKDIEMLDCNQMALFMEDSVNSGEPQSVNQRVGIEQAIFSVEKVIPNLEDLSLDSENVMRIQQGHIPVELFHGLKQLRLHSFDDESATFPYWLLEAIPTLERLGFPLLESVIVKECPGMKVFFCGVSGTPKLQKIHIDENTNKAYWQGNLNATGEKLFKDRFLYLGNYHSASHFELLKAVGISFILNTVPSCPNHHPSSFTYHSLSISHDKTWPFDEAVQFLEKCENDKGKVLVHCMSGNNRSPAIVTAYLMRSKGWRLAESYQWVKERRPSVKLTEAVYRQLQEYERGIYGSVDDVSNSYNANPPNPNRAE	772

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach4g01685	772	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	679	741	IPR000387	GO:0016311\|GO:0016791
	Bach4g01685	772	Gene3D	Protein tyrosine phosphatase superfamily	620	765	IPR029021	-
	Bach4g01685	772	SMART	dsp_5	614	749	IPR020422	GO:0006470\|GO:0008138
	Bach4g01685	772	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	622	749	IPR029021	-
	Bach4g01685	772	SUPERFAMILY	L domain-like	16	417	-	-
	Bach4g01685	772	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	615	752	IPR020422	GO:0006470\|GO:0008138
	Bach4g01685	772	ProSitePatterns	Tyrosine specific protein phosphatases active site.	694	704	IPR016130	GO:0016311\|GO:0016791
	Bach4g01685	772	Gene3D	Ribonuclease Inhibitor	11	141	IPR032675	-
	Bach4g01685	772	PANTHER	PROTEIN-TYROSINE-PHOSPHATASE IBR5	616	757	IPR044212	GO:0009734\|GO:0009738\|GO:0033549\|GO:0043407
	Bach4g01685	772	Gene3D	Ribonuclease Inhibitor	142	604	IPR032675	-
	Bach4g01685	772	Pfam	Dual specificity phosphatase, catalytic domain	623	748	IPR000340	GO:0008138\|GO:0016311

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach4g01685	Bach-Chr4	13493486	13497335	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach4g01685	622	736	Protein tyrosine phosphatase (PTP) family	AT2G04550	61.739	2.18e-43	153

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach4g01685	-		-	qsa:O6P43_032561	457.603