Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach4g01623 ATGGCCGGCGGAGTTACCGGCGCCGGAGACCGCACCCCGGAACTCCTCGGCCTAGTTCATGACATCGCCTCCATGTGCAGCGGACCTGGTGCCTCCTCCACCACCACCATTGCATCCGACGCTATGTTCAAGAAGGATTGCACCGATCTGGTTCGTCGGATCTCTCTACTCACCCATTTGTTCGAGGAGATTAGGGACTTGAAGCCTTGCGATTCGGGAATGATGGAAATGGATGCTTCTTCCTCATCTTCCCCAAAGTCTACTACCTCTTCCTGGTTCTCTGAGCTCGTGCTTGCGCTTCAGGCGGCTAAGCGCCTCCTTTCGGTGGCTAGAACCTTCCGTTCCAATTGCTCTTCTGATGGAGCTGCCAAGACTATTGTCTTCCAATTTCAGTGTGTGACATGGAAATTGGAAAAACTGTTAAGCAACATACCATTCGATAATTTGGAAATCTCAGAGGAAGTTACAGAACAGGTAGAATTGGCGAGAACACAATTGCGACGGGCCACAGAAAGATATGGAGCTATGATTTATGAGTTATCCCAGTCACCAGCTCAAGATATTAGTGAGGTTCTTGGCAAATCTATTAATAGATTGCGAAAACAGAAAAGCTTACCTGAAGAAACACTAAAACAGGTTAGCATTCCTAAAGTCAAAGGATGGAAAAGTTGCAATACGCATCAGACTATTCCTCGCTTGGAAAGAGTGAGGAGCATCCCCGCCTCTGCAGAGGCTTCTTTATCTAATGTCAGTGATCCTGGAAATCGAGAAAATTGTGAGAGACAGAATGTGACTCAAGTTAAAAAGCCCGAAGCAATTGTAATTCCTGAAGATTTTCTTTGCCCTATTTCTTTGGAACTAATGAGGGATCCTGTTATTGTGGCCACAGGTCAGACATATGAGAGATCTTATATACAGAGATGGATAGATTGTGGAAATACAACCTGTCCAAAAACTCAGCAGAAGCTTGAAAATTTAACCCTTACACCAAACTATGTTCTAAGAAGCCTTATCACTCAGTGGTGTATAGATCACAACATTGAGCAGCCAACAGGACTAACAAATGGGAAACTAAAGAAGAGCGACGGATCATTTAGAGATGTTACAGGTGATATAGCAGTCATTGAAGCTCTGGTTCGAAAGCTCTCAGGCCGCTCCCTCGAGGAGCGTCGAGCTGCTGTTACTGAAATTCGATCACTTTCCAAACGAAGCACAGACAACAGGATATTAATCGCAGAAGCGGGAGCTATTCCAGTTCTGGTCAACCTTCTGACATCTGAAGATGTATTAACACAAGAAAATGCAGTTACTTCTATTCTCAACCTGTCTATATATGAAAACAACAAGGGACTAATAATGCTTGCAGGAGCCATTCCATCAATTGTCCAAGTCCTCAGATCTGGAAGCATGGAAGCAAGAGAAAATGCAGCGGCGACCCTCTTTAGCTTGTCACTTGCAGATGAGAACAAGATAATAATTGGTGCTTCAGGAGCAATCCATGCTCTTGTAGACTTGCTCCAAAACGGGAGCCTTAGAGGTAAGAAGGATGCGGCAACAGCATTATTCAATCTATGCATTTATCAAGGGAACAAGGGTAGAGCCATCAGGGCAGGGATCATCACAGCATTGTTGAATATGCTTACAGAATCAAGCAAATCGATGGTTGATGAAGCCTTAACAATTATGTCAGTTCTTGCCAGTCACCAAGAGGCGAAGGTTGCCATTGTTAAAGCCAGTACTATACCTGTTCTAATAGATCTTCTGAGAACTGGACTGCCTCGCAACAAAGAGAATGCAGCTGCCATTTTGCTTGCCTTGTGCAAGAGGGATAGTGAAAATCTTTCCTGTATAAGTAGACTTGGTGCTGTGATACCTTTGACAGAACTTGCCAAGAGTGGCACGGAGAGAGCAAAGAGGAAGGCTACTTCATTATTGGAGCATCTTCGAAAGTTACAGCAACTTTGA 1965 0.4458 MAGGVTGAGDRTPELLGLVHDIASMCSGPGASSTTTIASDAMFKKDCTDLVRRISLLTHLFEEIRDLKPCDSGMMEMDASSSSSPKSTTSSWFSELVLALQAAKRLLSVARTFRSNCSSDGAAKTIVFQFQCVTWKLEKLLSNIPFDNLEISEEVTEQVELARTQLRRATERYGAMIYELSQSPAQDISEVLGKSINRLRKQKSLPEETLKQVSIPKVKGWKSCNTHQTIPRLERVRSIPASAEASLSNVSDPGNRENCERQNVTQVKKPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLENLTLTPNYVLRSLITQWCIDHNIEQPTGLTNGKLKKSDGSFRDVTGDIAVIEALVRKLSGRSLEERRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRSGSMEARENAAATLFSLSLADENKIIIGASGAIHALVDLLQNGSLRGKKDAATALFNLCIYQGNKGRAIRAGIITALLNMLTESSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDSENLSCISRLGAVIPLTELAKSGTERAKRKATSLLEHLRKLQQL 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach4g01623 654 CDD RING-Ubox_PUB 276 328 IPR045210 -
Bach4g01623 654 SMART Ubox_2 278 341 IPR003613 GO:0004842|GO:0016567
Bach4g01623 654 FunFam RING-type E3 ubiquitin transferase 274 349 - -
Bach4g01623 654 Coils Coil 152 172 - -
Bach4g01623 654 SMART arm_5 568 608 IPR000225 GO:0005515
Bach4g01623 654 SMART arm_5 527 567 IPR000225 GO:0005515
Bach4g01623 654 SMART arm_5 404 444 IPR000225 GO:0005515
Bach4g01623 654 SMART arm_5 486 526 IPR000225 GO:0005515
Bach4g01623 654 SMART arm_5 445 485 IPR000225 GO:0005515
Bach4g01623 654 SMART arm_5 610 650 IPR000225 GO:0005515
Bach4g01623 654 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 348 IPR013083 -
Bach4g01623 654 Gene3D - 450 552 IPR011989 -
Bach4g01623 654 Coils Coil 634 654 - -
Bach4g01623 654 Gene3D - 553 653 IPR011989 -
Bach4g01623 654 ProSiteProfiles U-box domain profile. 274 348 IPR003613 GO:0004842|GO:0016567
Bach4g01623 654 FunFam RING-type E3 ubiquitin transferase 452 552 - -
Bach4g01623 654 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 456 498 IPR000225 GO:0005515
Bach4g01623 654 SUPERFAMILY RING/U-box 274 349 - -
Bach4g01623 654 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 415 457 IPR000225 GO:0005515
Bach4g01623 654 Gene3D - 353 449 IPR011989 -
Bach4g01623 654 Pfam U-box domain 275 345 IPR003613 GO:0004842|GO:0016567
Bach4g01623 654 SUPERFAMILY ARM repeat 374 648 IPR016024 -
Bach4g01623 654 PANTHER U BOX DOMAIN-CONTAINING 42 650 - -
Bach4g01623 654 FunFam RING-type E3 ubiquitin transferase 358 451 - -
Bach4g01623 654 Pfam Armadillo/beta-catenin-like repeat 405 443 IPR000225 GO:0005515
Bach4g01623 654 Pfam Armadillo/beta-catenin-like repeat 487 525 IPR000225 GO:0005515
Bach4g01623 654 FunFam RING-type E3 ubiquitin transferase 554 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach4g01623 Bach-Chr4 12462661 12465805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach4g01623 1 653 U-box Gene Family AT1G23030 62.691 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach4g01623 - - gmx:100815448 972.23