Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach4g01595 ATGGATGTGTTCAACCAAATCAAGAAAACTACGACCCCAGGACGCAAGAAGATCGAGATCAAAGAGATTGACAAGGATTCCAACAAGCAAGTCACTTTCTCAAAGCGTCGCTCCGGCTTGTTCAAGAAAGCTAGCGAGCTTTGCGTTTTATGCAACACTCAACTCGCTATCATTGTGTTCTCTCCTGCTGATAAACCCTTCTGCTTCGGCCAACCTAAGGCCGAAGCAGTCCTCTGCCGCTACCTTGGAGGAGCCTCGAAGTCTGAAGTTTTTTCAGCGGCGGAGGACAATTCCTTGTCTTATAGAGAGCTGAATAAGAAGTACGAGGAGGCCACCAGGGTGTTAGAGTTAGAGCGGAAGCGCATAGAGGAGATTGAAAACCTAGCCAAGGTGTGGGACGGAGGGAATTGGTGGTGGGACCAGCCCATTGATGAGATGGATGTGGAGCAGTTGGAGCAATATGCAATAGCCATGCATGAGTTAAGGAGAAAATTAGCTGAGAGAGCAGATGGGTTGAGGGACAGGTTTGCAGCGCTACCTTATGGAGCAAACCCTTTAGGTCCAATGGGTGCAGTAAACTTTACCGGTTTTCTCAACCAGTTTGGTAGTAGAAAGTTAGGATTTTGA 627 0.4785 MDVFNQIKKTTTPGRKKIEIKEIDKDSNKQVTFSKRRSGLFKKASELCVLCNTQLAIIVFSPADKPFCFGQPKAEAVLCRYLGGASKSEVFSAAEDNSLSYRELNKKYEEATRVLELERKRIEEIENLAKVWDGGNWWWDQPIDEMDVEQLEQYAIAMHELRRKLAERADGLRDRFAALPYGANPLGPMGAVNFTGFLNQFGSRKLGF 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach4g01595 208 SUPERFAMILY SRF-like 14 91 IPR036879 GO:0003677|GO:0046983
Bach4g01595 208 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Bach4g01595 208 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Bach4g01595 208 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Bach4g01595 208 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Bach4g01595 208 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Bach4g01595 208 FunFam Agamous-like MADS-box protein AGL62 25 90 - -
Bach4g01595 208 Coils Coil 101 128 - -
Bach4g01595 208 PANTHER MADS BOX PROTEIN 15 166 - -
Bach4g01595 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 69 IPR002100 GO:0003677|GO:0046983
Bach4g01595 208 Gene3D - 26 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach4g01595 Bach-Chr4 12179938 12180564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach4g01595 14 194 Type I MADS-box Gene Family AT2G24840 38.974 1.55e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bach4g01595 SRF-TF 2.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach4g01595 - - pcin:129286086 241.506